1 HAMP#1
230-299 aa · 70 aa · 11.4% of protein
Raw token
HAMP:230:0.00000000000000121:299:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE692_RS00110
Histidine kinase, Classic
Bifidobacterium adolescentis · GCF_024460485
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024460485#NE692_RS00110Stable P2CS identifier used across views.
GenomeGCF_024460485Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 615 aa (46.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
310-379 aa · 70 aa · 11.4% of protein
Raw token
HisKA:310:1.52e-16:379:70:643 HATPase_c#3
443-590 aa · 148 aa · 24.1% of protein
Raw token
HATPase_c:443:9.59e-21:590:148:109- Raw architecture: HAMP:230:0.00000000000000121:299:70:69#HisKA:310:1.52e-16:379:70:64#HATPase_c:443:9.59e-21:590:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024460485::NZ_JANFYM010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26712-29299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE692_00110RefSeq proteinWP_305146700.1
Context group ID
GCF_024460485::NZ_JANFYM010000001.1::G00001Context members
NE692_RS00110NE692_RS00115
Partner locus tags
NE692_RS00110NE692_RS00115
Partner old locus tags
NE692_00110NE692_00115
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_305146700.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE692_RS00110Primary locus identifier stored in the genes table.
Old locus tagNE692_00110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFYM010000001.1Sequence record reported by the local genomic context database.
Genomic interval26 712-28 559 nt1 848 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 712-29 299 ntGCF_024460485::NZ_JANFYM010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024460485::NZ_JANFYM010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFYM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span26 712-29 299 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 712 nt29 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE692_RS00110GCF_024460485#NE692_RS00110
HKClassicCurrent focus
26 712-28 559 nt · Reverse (-)
NE692_RS00115GCF_024460485#NE692_RS00115
RROmpR
28 568-29 299 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108035#B0703_RS03095Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0989128
Simplified PFAM architecture for HKOC_0989128
PFAM domain coverage: 269 / 615 aa (43.7%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[247-299] | HisKA[311-379] | HATPase_c[443-589]
- Domain count: 3
- Matched identifier: HKOC_0989128
- Positioned domains: HAMP 247-299 ; HisKA 311-379 ; HATPase_c 443-589
Cluster members and taxonomy
Representative gene: GCF_002108035#B0703_RS03095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_024460485
AssemblyASM2446048v1 · Contighaploid
Genome composition2 548 534 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key