1 Response_reg#1
5-113 aa · 109 aa · 47.6% of protein
Raw token
Response_reg:5:4.68e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE704_RS13385
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_024459975
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024459975#NE704_RS13385Stable P2CS identifier used across views.
GenomeGCF_024459975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:150:1.94e-29:225:77:77- Raw architecture: Response_reg:5:4.68e-31:113:110:111#Trans_reg_C:150:1.94e-29:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024459975::NZ_JANFXP010000028.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2756-4368Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE704_13435RefSeq proteinWP_025580962.1
Context group ID
GCF_024459975::NZ_JANFXP010000028.1::G00017Context members
NE704_RS13380NE704_RS13385
Partner locus tags
NE704_RS13380NE704_RS13385
Partner old locus tags
NE704_13430NE704_13435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025580962.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AG97Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AG97_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE704_RS13385Primary locus identifier stored in the genes table.
Old locus tagNE704_13435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFXP010000028.1Sequence record reported by the local genomic context database.
Genomic interval3 679-4 368 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 756-4 368 ntGCF_024459975::NZ_JANFXP010000028.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024459975::NZ_JANFXP010000028.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFXP010000028.1All displayed genes belong to this local TCS context.
Neighborhood span2 756-4 368 nt1 613 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 756 nt4 368 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE704_RS13380GCF_024459975#NE704_RS13380
HKClassic
2 756-3 673 nt · Reverse (-)
NE704_RS13385GCF_024459975#NE704_RS13385
RROmpRCurrent focus
3 679-4 368 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0119700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1250027
Simplified PFAM architecture for RROC_1250027
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1250027
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0119700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_024459975
AssemblyASM2445997v1 · Contighaploid
Genome composition3 099 021 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key