1 Response_reg#1
4-113 aa · 110 aa · 21.5% of protein
Raw token
Response_reg:4:4.19e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE704_RS09705
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_024459975
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024459975#NE704_RS09705Stable P2CS identifier used across views.
GenomeGCF_024459975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 512 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:408:0.0000000292:449:42:423 HTH_AraC#3
463-494 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:463:0.00000017:494:32:42- Raw architecture: Response_reg:4:4.19e-30:113:110:111#HTH_AraC:408:0.0000000292:449:42:42#HTH_AraC:463:0.00000017:494:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024459975::NZ_JANFXP010000014.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26889-30114Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE704_09740RefSeq proteinWP_101879958.1
Context group ID
GCF_024459975::NZ_JANFXP010000014.1::G00011Context members
NE704_RS09705NE704_RS09710
Partner locus tags
NE704_RS09705NE704_RS09710
Partner old locus tags
NE704_09740NE704_09745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101879958.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NG93Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NG93_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE704_RS09705Primary locus identifier stored in the genes table.
Old locus tagNE704_09740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFXP010000014.1Sequence record reported by the local genomic context database.
Genomic interval26 889-28 427 nt1 539 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 889-30 114 ntGCF_024459975::NZ_JANFXP010000014.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024459975::NZ_JANFXP010000014.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFXP010000014.1All displayed genes belong to this local TCS context.
Neighborhood span26 889-30 114 nt3 226 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 889 nt30 114 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE704_RS09705GCF_024459975#NE704_RS09705
RRunclassifiedCurrent focus
26 889-28 427 nt · Forward (+)
NE704_RS09710GCF_024459975#NE704_RS09710
HKClassic
28 399-30 114 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865345#CDL23_RS10970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143437
Simplified PFAM architecture for RROC_0143437
PFAM domain coverage: 189 / 512 aa (36.9%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[421-499]
- Domain count: 2
- Matched identifier: RROC_0143437
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 421-499 ; HTH_18 421-499
Cluster members and taxonomy
Representative gene: GCF_002865345#CDL23_RS10970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_024459975
AssemblyASM2445997v1 · Contighaploid
Genome composition3 099 021 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key