1 HisKA#1
286-353 aa · 68 aa · 13.2% of protein
Raw token
HisKA:286:0.00000000000143:353:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE704_RS02310
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_024459975
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024459975#NE704_RS02310Stable P2CS identifier used across views.
GenomeGCF_024459975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 514 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
397-509 aa · 113 aa · 22.0% of protein
Raw token
HATPase_c:397:9.63e-29:509:113:109- Raw architecture: HisKA:286:0.00000000000143:353:68:64#HATPase_c:397:9.63e-29:509:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024459975::NZ_JANFXP010000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154657-156898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE704_02325RefSeq proteinWP_101875042.1
Context group ID
GCF_024459975::NZ_JANFXP010000002.1::G00014Context members
NE704_RS02310NE704_RS02315
Partner locus tags
NE704_RS02310NE704_RS02315
Partner old locus tags
NE704_02325NE704_02330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101875042.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NID8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NID8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE704_RS02310Primary locus identifier stored in the genes table.
Old locus tagNE704_02325Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFXP010000002.1Sequence record reported by the local genomic context database.
Genomic interval154 657-156 201 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 657-156 898 ntGCF_024459975::NZ_JANFXP010000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024459975::NZ_JANFXP010000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFXP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span154 657-156 898 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 657 nt156 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE704_RS02310GCF_024459975#NE704_RS02310
HKClassicCurrent focus
154 657-156 201 nt · Forward (+)
NE704_RS02315GCF_024459975#NE704_RS02315
RROmpR
156 194-156 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS08985Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1411934
Simplified PFAM architecture for HKOC_1411934
PFAM domain coverage: 286 / 514 aa (55.6%)
1 aa514 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[17-123] | HisKA[286-353] | HATPase_c[398-508]
- Domain count: 3
- Matched identifier: HKOC_1411934
- Positioned domains: DUF4118 17-123 ; HisKA 286-353 ; HATPase_c 398-508
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS08985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_024459975
AssemblyASM2445997v1 · Contighaploid
Genome composition3 099 021 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key