1 Response_reg#1
3-116 aa · 114 aa · 22.4% of protein
Raw token
Response_reg:3:3.93e-34:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NE704_RS01360
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_024459975
ClassRRTypeunclassifiedLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024459975#NE704_RS01360Stable P2CS identifier used across views.
GenomeGCF_024459975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 508 aa (37.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
414-455 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:414:0.0000000184:455:42:423 HTH_AraC#3
471-505 aa · 35 aa · 6.9% of protein
Raw token
HTH_AraC:471:0.000000529:505:35:42- Raw architecture: Response_reg:3:3.93e-34:116:114:111#HTH_AraC:414:0.0000000184:455:42:42#HTH_AraC:471:0.000000529:505:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024459975::NZ_JANFXP010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span284210-287442Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNE704_01375RefSeq proteinWP_256306068.1
Context group ID
GCF_024459975::NZ_JANFXP010000001.1::G00005Context members
NE704_RS01355NE704_RS01360
Partner locus tags
NE704_RS01355NE704_RS01360
Partner old locus tags
NE704_01370NE704_01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_256306068.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X3HHC9Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X3HHC9_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNE704_RS01360Primary locus identifier stored in the genes table.
Old locus tagNE704_01375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANFXP010000001.1Sequence record reported by the local genomic context database.
Genomic interval285 916-287 442 nt1 527 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span284 210-287 442 ntGCF_024459975::NZ_JANFXP010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024459975::NZ_JANFXP010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANFXP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span284 210-287 442 nt3 233 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
284 210 nt287 442 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NE704_RS01355GCF_024459975#NE704_RS01355
HKClassic
284 210-285 928 nt · Forward (+)
NE704_RS01360GCF_024459975#NE704_RS01360
RRunclassifiedCurrent focus
285 916-287 442 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024459975#NE704_RS01360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0149362
Simplified PFAM architecture for RROC_0149362
PFAM domain coverage: 192 / 508 aa (37.8%)
1 aa508 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[427-505]
- Domain count: 2
- Matched identifier: RROC_0149362
- Positioned domains: Response_reg 3-115 ; HTH_18 427-505
Cluster members and taxonomy
Representative gene: GCF_024459975#NE704_RS01360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_024459975
AssemblyASM2445997v1 · Contighaploid
Genome composition3 099 021 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key