1 Response_reg#1
5-114 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:5:4.77e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMG90_RS22670
Response regulator OmpR family
Bacillus mycoides · GCF_024297165
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024297165#NMG90_RS22670Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 228 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-224 aa · 74 aa · 32.5% of protein
Raw token
Trans_reg_C:151:9.08e-29:224:77:77- Raw architecture: Response_reg:5:4.77e-36:114:111:111#Trans_reg_C:151:9.08e-29:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024297165::NZ_JANCTB010000007.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25717-28184Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMG90_22670RefSeq proteinWP_078203546.1
Context group ID
GCF_024297165::NZ_JANCTB010000007.1::G00057Context members
NMG90_RS22665NMG90_RS22670
Partner locus tags
NMG90_RS22665NMG90_RS22670
Partner old locus tags
NMG90_22665NMG90_22670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078203546.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMG90_RS22670Primary locus identifier stored in the genes table.
Old locus tagNMG90_22670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCTB010000007.1Sequence record reported by the local genomic context database.
Genomic interval27 498-28 184 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 717-28 184 ntGCF_024297165::NZ_JANCTB010000007.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024297165::NZ_JANCTB010000007.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCTB010000007.1All displayed genes belong to this local TCS context.
Neighborhood span25 717-28 184 nt2 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 717 nt28 184 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMG90_RS22665GCF_024297165#NMG90_RS22665
HKClassic
25 717-27 501 nt · Reverse (-)
NMG90_RS22670GCF_024297165#NMG90_RS22670
RROmpRCurrent focus
27 498-28 184 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014505#BW899_RS15980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1311064
Simplified PFAM architecture for RROC_1311064
PFAM domain coverage: 183 / 228 aa (80.3%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1311064
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-224 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_002014505#BW899_RS15980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_024297165
AssemblyASM2429716v1 · Scaffoldhaploid
Genome composition4 919 367 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 104 · HK 57 · RR 47CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key