1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:9.93e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF80_RS15525
Response regulator OmpR family
Clostridioides difficile · GCF_024262305
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024262305#NMF80_RS15525Stable P2CS identifier used across views.
GenomeGCF_024262305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.1% of protein
Raw token
Trans_reg_C:147:3.24e-21:223:78:77- Raw architecture: Response_reg:5:9.93e-19:114:111:111#Trans_reg_C:147:3.24e-21:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024262305::NZ_JANCKO010000016.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span46643-47323Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF80_15575RefSeq proteinWP_254462844.1
Context group ID
GCF_024262305::NZ_JANCKO010000016.1::G00007Context members
NMF80_RS15525
Partner locus tags
NMF80_RS15525
Partner old locus tags
NMF80_15575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254462844.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF80_RS15525Primary locus identifier stored in the genes table.
Old locus tagNMF80_15575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKO010000016.1Sequence record reported by the local genomic context database.
Genomic interval46 643-47 323 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 643-47 323 ntGCF_024262305::NZ_JANCKO010000016.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024262305::NZ_JANCKO010000016.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKO010000016.1All displayed genes belong to this local TCS context.
Neighborhood span46 643-47 323 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 643 nt47 323 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMF80_RS15525GCF_024262305#NMF80_RS15525
RROmpRCurrent focus
46 643-47 323 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024260245#NMF81_RS10830Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1437336
Simplified PFAM architecture for RROC_1437336
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1437336
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_024260245#NMF81_RS10830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024262305
AssemblyASM2426230v1 · Contighaploid
Genome composition4 133 927 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key