1 Response_reg#1
32-116 aa · 85 aa · 35.9% of protein
Raw token
Response_reg:32:2.21e-16:116:88:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF45_RS17180
Response regulator LytTR family
Clostridioides difficile · GCF_024260515
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024260515#NMF45_RS17180Stable P2CS identifier used across views.
GenomeGCF_024260515Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 237 aa (75.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-229 aa · 93 aa · 39.2% of protein
Raw token
LytTR:137:7.36e-22:229:97:98- Raw architecture: Response_reg:32:2.21e-16:116:88:111#LytTR:137:7.36e-22:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024260515::NZ_JANCJY010000024.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26425-27138Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF45_17235RefSeq proteinWP_045146996.1
Context group ID
GCF_024260515::NZ_JANCJY010000024.1::G00022Context members
NMF45_RS17180
Partner locus tags
NMF45_RS17180
Partner old locus tags
NMF45_17235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_045146996.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF45_RS17180Primary locus identifier stored in the genes table.
Old locus tagNMF45_17235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCJY010000024.1Sequence record reported by the local genomic context database.
Genomic interval26 425-27 138 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 425-27 138 ntGCF_024260515::NZ_JANCJY010000024.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260515::NZ_JANCJY010000024.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCJY010000024.1All displayed genes belong to this local TCS context.
Neighborhood span26 425-27 138 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 425 nt27 138 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMF45_RS17180GCF_024260515#NMF45_RS17180
RRLytTRCurrent focus
26 425-27 138 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012955915#HGQ81_RS18910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0891252
Simplified PFAM architecture for RROC_0891252
PFAM domain coverage: 188 / 240 aa (78.3%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[24-119] | LytTR[140-231]
- Domain count: 2
- Matched identifier: RROC_0891252
- Positioned domains: Response_reg 24-119 ; LytTR 140-231
Cluster members and taxonomy
Representative gene: GCF_012955915#HGQ81_RS18910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260515
AssemblyASM2426051v1 · Contighaploid
Genome composition4 025 284 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key