1 PAS_9#1
529-629 aa · 101 aa · 11.1% of protein
Raw token
PAS_9:529:0.0000762:629:101:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF89_RS04475
Histidine kinase, Classic
Clostridioides difficile · GCF_024260265
ClassHKTypeClassicLength912 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024260265#NMF89_RS04475Stable P2CS identifier used across views.
GenomeGCF_024260265Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length912 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage284 / 912 aa (31.1%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa912 aa
Domain-by-domain annotation3 items
2 HisKA#2
655-726 aa · 72 aa · 7.9% of protein
Raw token
HisKA:655:0.00000000000000745:726:72:643 HATPase_c#3
773-883 aa · 111 aa · 12.2% of protein
Raw token
HATPase_c:773:3.52e-31:883:111:109- Raw architecture: PAS_9:529:0.0000762:629:101:102#HisKA:655:0.00000000000000745:726:72:64#HATPase_c:773:3.52e-31:883:111:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024260265::NZ_JANCKN010000003.1::G00039
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span243006-245744Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF89_04470RefSeq proteinWP_021375977.1
Context group ID
GCF_024260265::NZ_JANCKN010000003.1::G00039Context members
NMF89_RS04475
Partner locus tags
NMF89_RS04475
Partner old locus tags
NMF89_04470
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021375977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF89_RS04475Primary locus identifier stored in the genes table.
Old locus tagNMF89_04470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKN010000003.1Sequence record reported by the local genomic context database.
Genomic interval243 006-245 744 nt2 739 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span243 006-245 744 ntGCF_024260265::NZ_JANCKN010000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260265::NZ_JANCKN010000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span243 006-245 744 nt2 739 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
243 006 nt245 744 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMF89_RS04475GCF_024260265#NMF89_RS04475
HKClassicCurrent focus
243 006-245 744 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS12630Use this link to inspect the representative gene detail.
PFAM architecturePAS_8 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0387889
Simplified PFAM architecture for HKOC_0387889
PFAM domain coverage: 340 / 912 aa (37.3%)
1 aa912 aa
PAS_8PAS_9HisKAHATPase_c
- Simplified architecture: PAS_8 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_8[303-355] | PAS_9[529-632] | HisKA[655-726] | HATPase_c[773-883]
- Domain count: 4
- Matched identifier: HKOC_0387889
- Positioned domains: PAS_8 303-355 ; PAS_9 529-632 ; HisKA 655-726 ; HATPase_c 773-883
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS12630
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 42 over 42 total members. Page 1 / 1.
GCF_000449185#QCW_RS12630 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260265
AssemblyASM2426026v1 · Contighaploid
Genome composition3 995 697 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 92 · HK 41 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key