1 Response_reg#1
9-114 aa · 106 aa · 44.7% of protein
Raw token
Response_reg:9:6.3e-29:114:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF81_RS16385
Response regulator OmpR family
Clostridioides difficile · GCF_024260245
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024260245#NMF81_RS16385Stable P2CS identifier used across views.
GenomeGCF_024260245Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 237 aa (76.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-232 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:157:7.03e-29:232:76:77- Raw architecture: Response_reg:9:6.3e-29:114:107:111#Trans_reg_C:157:7.03e-29:232:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024260245::NZ_JANCKM010000015.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11209-11922Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF81_16355RefSeq proteinWP_254478859.1
Context group ID
GCF_024260245::NZ_JANCKM010000015.1::G00010Context members
NMF81_RS16385
Partner locus tags
NMF81_RS16385
Partner old locus tags
NMF81_16355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254478859.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF81_RS16385Primary locus identifier stored in the genes table.
Old locus tagNMF81_16355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKM010000015.1Sequence record reported by the local genomic context database.
Genomic interval11 209-11 922 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 209-11 922 ntGCF_024260245::NZ_JANCKM010000015.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260245::NZ_JANCKM010000015.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKM010000015.1All displayed genes belong to this local TCS context.
Neighborhood span11 209-11 922 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 209 nt11 922 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMF81_RS16385GCF_024260245#NMF81_RS16385
RROmpRCurrent focus
11 209-11 922 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024260245#NMF81_RS16385The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0976649
Simplified PFAM architecture for RROC_0976649
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[157-232]
- Domain count: 2
- Matched identifier: RROC_0976649
- Positioned domains: Response_reg 9-117 ; Trans_reg_C 157-232
Cluster members and taxonomy
Representative gene: GCF_024260245#NMF81_RS16385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260245
AssemblyASM2426024v1 · Contighaploid
Genome composition4 007 058 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key