1 HisKA#1
234-299 aa · 66 aa · 14.5% of protein
Raw token
HisKA:234:0.00000000000000227:299:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF84_RS06960
Histidine kinase, Classic
Clostridioides difficile · GCF_024260215
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024260215#NMF84_RS06960Stable P2CS identifier used across views.
GenomeGCF_024260215Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 454 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-454 aa · 111 aa · 24.4% of protein
Raw token
HATPase_c:344:9.16e-22:454:111:109- Raw architecture: HisKA:234:0.00000000000000227:299:66:64#HATPase_c:344:9.16e-22:454:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024260215::NZ_JANCKQ010000005.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84715-86729Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF84_06965RefSeq proteinWP_074048951.1
Context group ID
GCF_024260215::NZ_JANCKQ010000005.1::G00046Context members
NMF84_RS06955NMF84_RS06960
Partner locus tags
NMF84_RS06955NMF84_RS06960
Partner old locus tags
NMF84_06960NMF84_06965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074048951.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF84_RS06960Primary locus identifier stored in the genes table.
Old locus tagNMF84_06965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval85 365-86 729 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 715-86 729 ntGCF_024260215::NZ_JANCKQ010000005.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260215::NZ_JANCKQ010000005.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span84 715-86 729 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 715 nt86 729 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMF84_RS06955GCF_024260215#NMF84_RS06955
RROmpR
84 715-85 374 nt · Forward (+)
NMF84_RS06960GCF_024260215#NMF84_RS06960
HKClassicCurrent focus
85 365-86 729 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003456975#CDIF102859_RS02630Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1915083
Simplified PFAM architecture for HKOC_1915083
PFAM domain coverage: 177 / 454 aa (39.0%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-299] | HATPase_c[344-454]
- Domain count: 2
- Matched identifier: HKOC_1915083
- Positioned domains: HisKA 234-299 ; HATPase_c 344-454
Cluster members and taxonomy
Representative gene: GCF_003456975#CDIF102859_RS02630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260215
AssemblyASM2426021v1 · Contighaploid
Genome composition4 118 329 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 96 · HK 43 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key