1 HisKA#1
449-514 aa · 66 aa · 10.0% of protein
Raw token
HisKA:449:0.00000000837:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF94_RS05985
Histidine kinase, Classic
Clostridioides difficile · GCF_024260185
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_024260185#NMF94_RS05985Stable P2CS identifier used across views.
GenomeGCF_024260185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 663 aa (24.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa663 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
565-661 aa · 97 aa · 14.6% of protein
Raw token
HATPase_c:565:2.1e-27:661:97:109- Raw architecture: HisKA:449:0.00000000837:514:66:64#HATPase_c:565:2.1e-27:661:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_024260185::NZ_JANCKS010000006.1::G00048
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span40017-45740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF94_05985RefSeq proteinWP_236887127.1
Context group ID
GCF_024260185::NZ_JANCKS010000006.1::G00048Context members
NMF94_RS05970NMF94_RS05975NMF94_RS05980NMF94_RS05985NMF94_RS05990
Partner locus tags
NMF94_RS05970NMF94_RS05975NMF94_RS05980NMF94_RS05985NMF94_RS05990
Partner old locus tags
NMF94_05970NMF94_05975NMF94_05980NMF94_05985NMF94_05990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236887127.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF94_RS05985Primary locus identifier stored in the genes table.
Old locus tagNMF94_05985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKS010000006.1Sequence record reported by the local genomic context database.
Genomic interval43 000-44 991 nt1 992 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 017-45 740 ntGCF_024260185::NZ_JANCKS010000006.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260185::NZ_JANCKS010000006.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKS010000006.1All displayed genes belong to this local TCS context.
Neighborhood span40 017-45 740 nt5 724 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 017 nt45 740 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
NMF94_RS05970GCF_024260185#NMF94_RS05970
HKClassic
40 017-41 132 nt · Reverse (-)
NMF94_RS05975GCF_024260185#NMF94_RS05975
RROmpR
41 168-41 866 nt · Reverse (-)
NMF94_RS05980GCF_024260185#NMF94_RS05980
RROmpR
42 247-42 927 nt · Reverse (-)
NMF94_RS05985GCF_024260185#NMF94_RS05985
HKClassicCurrent focus
43 000-44 991 nt · Reverse (-)
NMF94_RS05990GCF_024260185#NMF94_RS05990
RROmpR
45 063-45 740 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS17265Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0865249
Simplified PFAM architecture for HKOC_0865249
PFAM domain coverage: 164 / 663 aa (24.7%)
1 aa663 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[563-661]
- Domain count: 2
- Matched identifier: HKOC_0865249
- Positioned domains: HisKA 450-514 ; HATPase_c 563-661
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS17265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260185
AssemblyASM2426018v1 · Contighaploid
Genome composition4 088 797 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 48 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key