1 Response_reg#1
5-115 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:5:2.25e-30:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF83_RS16040
Response regulator OmpR family
Clostridioides difficile · GCF_024260155
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024260155#NMF83_RS16040Stable P2CS identifier used across views.
GenomeGCF_024260155Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:152:3.21e-34:228:77:77- Raw architecture: Response_reg:5:2.25e-30:115:111:111#Trans_reg_C:152:3.21e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024260155::NZ_JANCKU010000073.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10096-12230Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF83_16045RefSeq proteinWP_074138769.1
Context group ID
GCF_024260155::NZ_JANCKU010000073.1::G00046Context members
NMF83_RS16040NMF83_RS16045
Partner locus tags
NMF83_RS16040NMF83_RS16045
Partner old locus tags
NMF83_16045NMF83_16050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074138769.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF83_RS16040Primary locus identifier stored in the genes table.
Old locus tagNMF83_16045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKU010000073.1Sequence record reported by the local genomic context database.
Genomic interval10 096-10 794 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 096-12 230 ntGCF_024260155::NZ_JANCKU010000073.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260155::NZ_JANCKU010000073.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKU010000073.1All displayed genes belong to this local TCS context.
Neighborhood span10 096-12 230 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 096 nt12 230 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMF83_RS16040GCF_024260155#NMF83_RS16040
RROmpRCurrent focus
10 096-10 794 nt · Forward (+)
NMF83_RS16045GCF_024260155#NMF83_RS16045
HKClassic
10 797-12 230 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS08945Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1133843
Simplified PFAM architecture for RROC_1133843
PFAM domain coverage: 188 / 232 aa (81.0%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1133843
- Positioned domains: Response_reg 5-115 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS08945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260155
AssemblyASM2426015v1 · Contighaploid
Genome composition4 170 111 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 49 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key