Gene detail

NMF85_RS05150

Histidine kinase, Classic

Clostridioides difficile · GCF_024260145

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength462 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_024260145#NMF85_RS05150Stable P2CS identifier used across views.

GenomeGCF_024260145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides

Selected clusterHKOC_1812015Run 6 · 10 sequences · id 100% · cov 80%

External referencesWP_085059761.1 · MIST4 NMF85_RS05150RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length462 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage174 / 462 aa (37.7%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa462 aa

Domain-by-domain annotation2 items

1 HisKA#1

241-305 aa · 65 aa · 14.1% of protein

Raw tokenHisKA:241:0.00000000000149:305:65:64

2 HATPase_c#2

352-460 aa · 109 aa · 23.6% of protein

Raw tokenHATPase_c:352:5.97e-22:460:109:109

Raw architecture: HisKA:241:0.00000000000149:305:65:64#HATPase_c:352:5.97e-22:460:109:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_024260145::NZ_JANCKV010000009.1::G00052

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span20845-22233Genomic interval covered by the local TCS group.

Identifiers

Old locus tagNMF85_05140RefSeq proteinWP_085059761.1

Context group IDGCF_024260145::NZ_JANCKV010000009.1::G00052

Context members

NMF85_RS05150

Partner locus tags

NMF85_RS05150

Partner old locus tags

NMF85_05140

Partner protein IDs

WP_085059761.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_085059761.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagNMF85_RS05150Primary locus identifier stored in the genes table.

Old locus tagNMF85_05140Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_JANCKV010000009.1Sequence record reported by the local genomic context database.

Genomic interval20 845-22 233 nt1 389 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span20 845-22 233 ntGCF_024260145::NZ_JANCKV010000009.1::G00052

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_024260145::NZ_JANCKV010000009.1::G00052

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_JANCKV010000009.1All displayed genes belong to this local TCS context.

Neighborhood span20 845-22 233 nt1 389 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

20 845 nt22 233 nt

+-NMF85_RS05150

Neighborhood gene cards

1 gene in the current local neighborhood.

NMF85_RS05150GCF_024260145#NMF85_RS05150

HKClassicCurrent focus

20 845-22 233 nt · Forward (+)

Old locus NMF85_05140RefSeq WP_085059761.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1812015HK

Run 610 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Representative GCF_012029905#GSQ35_RS02490

Selected clusterHKOC_1812015Run 6 · HK · 10 sequences

Representative sequenceGCF_012029905#GSQ35_RS02490Use this link to inspect the representative gene detail.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1812015

Simplified PFAM architecture for HKOC_1812015

PFAM domain coverage: 174 / 462 aa (37.7%)

1 aa462 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[241-305] | HATPase_c[352-460]
Domain count: 2
Matched identifier: HKOC_1812015
Positioned domains: HisKA 241-305 ; HATPase_c 352-460

Cluster members and taxonomy

Representative gene: GCF_012029905#GSQ35_RS02490

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260145

AssemblyASM2426014v1 · Contighaploid

Genome composition4 130 739 bp · 28,5% GCClostridioides difficile

Signal transduction countsGenes 90 · HK 41 · RR 47CheA 1 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key