1 HisKA#1
94-156 aa · 63 aa · 20.3% of protein
Raw token
HisKA:94:0.000000098:156:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF90_RS18475
Histidine kinase, Classic
Clostridioides difficile · GCF_024260125
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024260125#NMF90_RS18475Stable P2CS identifier used across views.
GenomeGCF_024260125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 311 aa (54.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
204-310 aa · 107 aa · 34.4% of protein
Raw token
HATPase_c:204:9.49e-30:310:107:109- Raw architecture: HisKA:94:0.000000098:156:63:64#HATPase_c:204:9.49e-30:310:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024260125::NZ_JANCKT010000035.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29108-30732Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF90_18415RefSeq proteinWP_254487017.1
Context group ID
GCF_024260125::NZ_JANCKT010000035.1::G00037Context members
NMF90_RS18475NMF90_RS18480
Partner locus tags
NMF90_RS18475NMF90_RS18480
Partner old locus tags
NMF90_18415NMF90_18420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254487017.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF90_RS18475Primary locus identifier stored in the genes table.
Old locus tagNMF90_18415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKT010000035.1Sequence record reported by the local genomic context database.
Genomic interval29 108-30 043 nt936 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 108-30 732 ntGCF_024260125::NZ_JANCKT010000035.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260125::NZ_JANCKT010000035.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKT010000035.1All displayed genes belong to this local TCS context.
Neighborhood span29 108-30 732 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 108 nt30 732 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMF90_RS18475GCF_024260125#NMF90_RS18475
HKClassicCurrent focus
29 108-30 043 nt · Reverse (-)
NMF90_RS18480GCF_024260125#NMF90_RS18480
RROmpR
30 040-30 732 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024260125#NMF90_RS18475The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2877725
Simplified PFAM architecture for HKOC_2877725
PFAM domain coverage: 170 / 311 aa (54.7%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[93-155] | HATPase_c[204-310]
- Domain count: 2
- Matched identifier: HKOC_2877725
- Positioned domains: HisKA 93-155 ; HATPase_c 204-310
Cluster members and taxonomy
Representative gene: GCF_024260125#NMF90_RS18475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260125
AssemblyASM2426012v1 · Contighaploid
Genome composition4 322 268 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key