1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:8.58e-25:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF90_RS09700
Response regulator OmpR family
Clostridioides difficile · GCF_024260125
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024260125#NMF90_RS09700Stable P2CS identifier used across views.
GenomeGCF_024260125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-226 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:151:9.72e-24:226:77:77- Raw architecture: Response_reg:5:8.58e-25:114:111:111#Trans_reg_C:151:9.72e-24:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024260125::NZ_JANCKT010000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132689-134395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF90_09680RefSeq proteinWP_102815491.1
Context group ID
GCF_024260125::NZ_JANCKT010000010.1::G00002Context members
NMF90_RS09695NMF90_RS09700
Partner locus tags
NMF90_RS09695NMF90_RS09700
Partner old locus tags
NMF90_09675NMF90_09680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_102815491.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF90_RS09700Primary locus identifier stored in the genes table.
Old locus tagNMF90_09680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKT010000010.1Sequence record reported by the local genomic context database.
Genomic interval133 703-134 395 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span132 689-134 395 ntGCF_024260125::NZ_JANCKT010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260125::NZ_JANCKT010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKT010000010.1All displayed genes belong to this local TCS context.
Neighborhood span132 689-134 395 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 689 nt134 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMF90_RS09695GCF_024260125#NMF90_RS09695
HKClassic
132 689-133 462 nt · Reverse (-)
NMF90_RS09700GCF_024260125#NMF90_RS09700
RROmpRCurrent focus
133 703-134 395 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891605#AMR89_RS17645Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1209656
Simplified PFAM architecture for RROC_1209656
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1209656
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_002891605#AMR89_RS17645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260125
AssemblyASM2426012v1 · Contighaploid
Genome composition4 322 268 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key