1 Response_reg#1
6-112 aa · 107 aa · 75.4% of protein
Raw token
Response_reg:6:2.28e-19:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF90_RS03920
Response regulator, CheY family
Clostridioides difficile · GCF_024260125
ClassRRTypeCheYLength142 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024260125#NMF90_RS03920Stable P2CS identifier used across views.
GenomeGCF_024260125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length142 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage107 / 142 aa (75.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa142 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.28e-19:112:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024260125::NZ_JANCKT010000003.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span105859-106287Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF90_03915RefSeq proteinWP_254486653.1
Context group ID
GCF_024260125::NZ_JANCKT010000003.1::G00043Context members
NMF90_RS03920
Partner locus tags
NMF90_RS03920
Partner old locus tags
NMF90_03915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254486653.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF90_RS03920Primary locus identifier stored in the genes table.
Old locus tagNMF90_03915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKT010000003.1Sequence record reported by the local genomic context database.
Genomic interval105 859-106 287 nt429 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span105 859-106 287 ntGCF_024260125::NZ_JANCKT010000003.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260125::NZ_JANCKT010000003.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKT010000003.1All displayed genes belong to this local TCS context.
Neighborhood span105 859-106 287 nt429 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 859 nt106 287 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMF90_RS03920GCF_024260125#NMF90_RS03920
RRCheYCurrent focus
105 859-106 287 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024260125#NMF90_RS03920The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2261017
Simplified PFAM architecture for RROC_2261017
PFAM domain coverage: 111 / 142 aa (78.2%)
1 aa142 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-116]
- Domain count: 1
- Matched identifier: RROC_2261017
- Positioned domains: Response_reg 6-116
Cluster members and taxonomy
Representative gene: GCF_024260125#NMF90_RS03920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260125
AssemblyASM2426012v1 · Contighaploid
Genome composition4 322 268 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key