1 HisKA#1
566-632 aa · 67 aa · 8.5% of protein
Raw token
HisKA:566:2.42e-18:632:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF90_RS00925
Histidine kinase, Classic
Clostridioides difficile · GCF_024260125
ClassHKTypeClassicLength786 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024260125#NMF90_RS00925Stable P2CS identifier used across views.
GenomeGCF_024260125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length786 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 786 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
679-783 aa · 105 aa · 13.4% of protein
Raw token
HATPase_c:679:0.000000000252:783:110:109- Raw architecture: HisKA:566:2.42e-18:632:67:64#HATPase_c:679:0.000000000252:783:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024260125::NZ_JANCKT010000001.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208921-211969Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF90_00925RefSeq proteinWP_236878607.1
Context group ID
GCF_024260125::NZ_JANCKT010000001.1::G00016Context members
NMF90_RS00925NMF90_RS00930
Partner locus tags
NMF90_RS00925NMF90_RS00930
Partner old locus tags
NMF90_00925NMF90_00930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236878607.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF90_RS00925Primary locus identifier stored in the genes table.
Old locus tagNMF90_00925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKT010000001.1Sequence record reported by the local genomic context database.
Genomic interval208 921-211 281 nt2 361 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span208 921-211 969 ntGCF_024260125::NZ_JANCKT010000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260125::NZ_JANCKT010000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span208 921-211 969 nt3 049 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 921 nt211 969 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NMF90_RS00925GCF_024260125#NMF90_RS00925
HKClassicCurrent focus
208 921-211 281 nt · Reverse (-)
NMF90_RS00930GCF_024260125#NMF90_RS00930
RROmpR
211 253-211 969 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS01410Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0581633
Simplified PFAM architecture for HKOC_0581633
PFAM domain coverage: 172 / 786 aa (21.9%)
1 aa786 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[566-632] | HATPase_c[679-783]
- Domain count: 2
- Matched identifier: HKOC_0581633
- Positioned domains: HisKA 566-632 ; HATPase_c 679-783
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS01410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260125
AssemblyASM2426012v1 · Contighaploid
Genome composition4 322 268 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key