1 HisKA#1
156-222 aa · 67 aa · 17.8% of protein
Raw token
HisKA:156:0.0000000000000121:222:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMG01_RS08415
Histidine kinase, Classic
Clostridioides difficile · GCF_024260055
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024260055#NMG01_RS08415Stable P2CS identifier used across views.
GenomeGCF_024260055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 377 aa (40.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
275-360 aa · 86 aa · 22.8% of protein
Raw token
HATPase_c:275:0.0000000456:360:90:109- Raw architecture: HisKA:156:0.0000000000000121:222:67:64#HATPase_c:275:0.0000000456:360:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024260055::NZ_JANCKZ010000046.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span24379-25514Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMG01_08435RefSeq proteinWP_254466651.1
Context group ID
GCF_024260055::NZ_JANCKZ010000046.1::G00037Context members
NMG01_RS08415
Partner locus tags
NMG01_RS08415
Partner old locus tags
NMG01_08435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254466651.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMG01_RS08415Primary locus identifier stored in the genes table.
Old locus tagNMG01_08435Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKZ010000046.1Sequence record reported by the local genomic context database.
Genomic interval24 379-25 514 nt1 136 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span24 379-25 514 ntGCF_024260055::NZ_JANCKZ010000046.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260055::NZ_JANCKZ010000046.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKZ010000046.1All displayed genes belong to this local TCS context.
Neighborhood span24 379-25 514 nt1 136 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 379 nt25 514 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMG01_RS08415GCF_024260055#NMG01_RS08415
HKClassicCurrent focus
24 379-25 514 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448725#QAW_RS12370Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1355674
Simplified PFAM architecture for HKOC_1355674
PFAM domain coverage: 191 / 530 aa (36.0%)
1 aa530 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[255-295] | HisKA[310-375] | HATPase_c[427-510]
- Domain count: 3
- Matched identifier: HKOC_1355674
- Positioned domains: HAMP 255-295 ; HisKA 310-375 ; HATPase_c 427-510
Cluster members and taxonomy
Representative gene: GCF_000448725#QAW_RS12370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260055
AssemblyASM2426005v1 · Contighaploid
Genome composition4 186 004 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key