1 HisKA#1
82-147 aa · 66 aa · 21.9% of protein
Raw token
HisKA:82:0.000000233:147:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMG01_RS07560
Histidine kinase, Classic
Clostridioides difficile · GCF_024260055
ClassHKTypeClassicLength301 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024260055#NMG01_RS07560Stable P2CS identifier used across views.
GenomeGCF_024260055Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 301 aa (55.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
199-299 aa · 101 aa · 33.6% of protein
Raw token
HATPase_c:199:1.23e-24:299:101:109- Raw architecture: HisKA:82:0.000000233:147:66:64#HATPase_c:199:1.23e-24:299:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024260055::NZ_JANCKZ010000040.1::G00035
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-907Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMG01_07580RefSeq proteinWP_254466647.1
Context group ID
GCF_024260055::NZ_JANCKZ010000040.1::G00035Context members
NMG01_RS07560
Partner locus tags
NMG01_RS07560
Partner old locus tags
NMG01_07580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254466647.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMG01_RS07560Primary locus identifier stored in the genes table.
Old locus tagNMG01_07580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCKZ010000040.1Sequence record reported by the local genomic context database.
Genomic interval1-907 nt907 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-907 ntGCF_024260055::NZ_JANCKZ010000040.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260055::NZ_JANCKZ010000040.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCKZ010000040.1All displayed genes belong to this local TCS context.
Neighborhood span1-907 nt907 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt907 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMG01_RS07560GCF_024260055#NMG01_RS07560
HKClassicCurrent focus
1-907 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS14125Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827842
Simplified PFAM architecture for HKOC_2827842
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827842
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS14125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260055
AssemblyASM2426005v1 · Contighaploid
Genome composition4 186 004 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 49CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key