1 HisKA#1
148-211 aa · 64 aa · 17.3% of protein
Raw token
HisKA:148:0.0000000000000882:211:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF97_RS14695
Histidine kinase, Classic
Clostridioides difficile · GCF_024260045
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_024260045#NMF97_RS14695Stable P2CS identifier used across views.
GenomeGCF_024260045Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 371 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-368 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:260:4.62e-25:368:110:109- Raw architecture: HisKA:148:0.0000000000000882:211:64:64#HATPase_c:260:4.62e-25:368:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_024260045::NZ_JANCLB010000076.1::G00046
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span12705-18431Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF97_14665RefSeq proteinWP_107578576.1
Context group ID
GCF_024260045::NZ_JANCLB010000076.1::G00046Context members
NMF97_RS14695NMF97_RS14700NMF97_RS14705NMF97_RS14710NMF97_RS14715
Partner locus tags
NMF97_RS14695NMF97_RS14700NMF97_RS14705NMF97_RS14710NMF97_RS14715
Partner old locus tags
NMF97_14665NMF97_14670NMF97_14675NMF97_14680NMF97_14685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_107578576.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF97_RS14695Primary locus identifier stored in the genes table.
Old locus tagNMF97_14665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCLB010000076.1Sequence record reported by the local genomic context database.
Genomic interval12 705-13 820 nt1 116 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 705-18 431 ntGCF_024260045::NZ_JANCLB010000076.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024260045::NZ_JANCLB010000076.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCLB010000076.1All displayed genes belong to this local TCS context.
Neighborhood span12 705-18 431 nt5 727 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 705 nt18 431 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
NMF97_RS14695GCF_024260045#NMF97_RS14695
HKClassicCurrent focus
12 705-13 820 nt · Reverse (-)
NMF97_RS14700GCF_024260045#NMF97_RS14700
RROmpR
13 856-14 554 nt · Reverse (-)
NMF97_RS14705GCF_024260045#NMF97_RS14705
RROmpR
14 937-15 617 nt · Reverse (-)
NMF97_RS14710GCF_024260045#NMF97_RS14710
HKClassic
15 667-17 682 nt · Reverse (-)
NMF97_RS14715GCF_024260045#NMF97_RS14715
RROmpR
17 754-18 431 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024259965#NMF99_RS02350Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2679320
Simplified PFAM architecture for HKOC_2679320
PFAM domain coverage: 174 / 371 aa (46.9%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[149-213] | HATPase_c[261-369]
- Domain count: 2
- Matched identifier: HKOC_2679320
- Positioned domains: HisKA 149-213 ; HATPase_c 261-369
Cluster members and taxonomy
Representative gene: GCF_024259965#NMF99_RS02350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024260045
AssemblyASM2426004v1 · Contighaploid
Genome composition4 065 303 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 48 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key