1 HisKA#1
199-263 aa · 65 aa · 15.5% of protein
Raw token
HisKA:199:0.00000000000137:263:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NMF99_RS10055
Histidine kinase, Classic
Clostridioides difficile · GCF_024259965
ClassHKTypeClassicLength420 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024259965#NMF99_RS10055Stable P2CS identifier used across views.
GenomeGCF_024259965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length420 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 420 aa (41.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa420 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
310-418 aa · 109 aa · 26.0% of protein
Raw token
HATPase_c:310:1.75e-21:418:109:109- Raw architecture: HisKA:199:0.00000000000137:263:65:64#HATPase_c:310:1.75e-21:418:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024259965::NZ_JANCLH010000030.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span43406-44670Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNMF99_10055RefSeq proteinWP_254469492.1
Context group ID
GCF_024259965::NZ_JANCLH010000030.1::G00018Context members
NMF99_RS10055
Partner locus tags
NMF99_RS10055
Partner old locus tags
NMF99_10055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_254469492.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNMF99_RS10055Primary locus identifier stored in the genes table.
Old locus tagNMF99_10055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANCLH010000030.1Sequence record reported by the local genomic context database.
Genomic interval43 406-44 670 nt1 265 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 406-44 670 ntGCF_024259965::NZ_JANCLH010000030.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024259965::NZ_JANCLH010000030.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANCLH010000030.1All displayed genes belong to this local TCS context.
Neighborhood span43 406-44 670 nt1 265 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 406 nt44 670 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NMF99_RS10055GCF_024259965#NMF99_RS10055
HKClassicCurrent focus
43 406-44 670 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0206580Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1807349
Simplified PFAM architecture for HKOC_1807349
PFAM domain coverage: 174 / 462 aa (37.7%)
1 aa462 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[241-305] | HATPase_c[352-460]
- Domain count: 2
- Matched identifier: HKOC_1807349
- Positioned domains: HisKA 241-305 ; HATPase_c 352-460
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0206580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_024259965
AssemblyASM2425996v1 · Contighaploid
Genome composition4 076 492 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key