1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:4.51e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NB460_RS16425
Response regulator OmpR family
Clostridioides difficile · GCF_023656875
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_023656875#NB460_RS16425Stable P2CS identifier used across views.
GenomeGCF_023656875Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:8.83e-28:232:78:77- Raw architecture: Response_reg:5:4.51e-37:114:111:111#Trans_reg_C:155:8.83e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_023656875::NZ_JAMOJW010000001.1::G00053
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3575378-3581102Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNB460_16420RefSeq proteinWP_102815011.1
Context group ID
GCF_023656875::NZ_JAMOJW010000001.1::G00053Context members
NB460_RS16420NB460_RS16425NB460_RS16430NB460_RS16435NB460_RS16440
Partner locus tags
NB460_RS16420NB460_RS16425NB460_RS16430NB460_RS16435NB460_RS16440
Partner old locus tags
NB460_16415NB460_16420NB460_16425NB460_16430NB460_16435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_102815011.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNB460_RS16425Primary locus identifier stored in the genes table.
Old locus tagNB460_16420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJW010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 576 529-3 577 227 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 575 378-3 581 102 ntGCF_023656875::NZ_JAMOJW010000001.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656875::NZ_JAMOJW010000001.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 575 378-3 581 102 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 575 378 nt3 581 102 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
NB460_RS16420GCF_023656875#NB460_RS16420
HKClassic
3 575 378-3 576 493 nt · Reverse (-)
NB460_RS16425GCF_023656875#NB460_RS16425
RROmpRCurrent focus
3 576 529-3 577 227 nt · Reverse (-)
NB460_RS16430GCF_023656875#NB460_RS16430
RROmpR
3 577 608-3 578 288 nt · Reverse (-)
NB460_RS16435GCF_023656875#NB460_RS16435
HKClassic
3 578 338-3 580 353 nt · Reverse (-)
NB460_RS16440GCF_023656875#NB460_RS16440
RROmpR
3 580 425-3 581 102 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891605#AMR89_RS11085Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127994
Simplified PFAM architecture for RROC_1127994
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1127994
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_002891605#AMR89_RS11085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656875
AssemblyASM2365687v1 · Scaffoldhaploid
Genome composition4 174 231 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 46 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key