1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:5.83e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NB460_RS07415
Response regulator OmpR family
Clostridioides difficile · GCF_023656875
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023656875#NB460_RS07415Stable P2CS identifier used across views.
GenomeGCF_023656875Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.86e-30:232:78:77- Raw architecture: Response_reg:12:5.83e-29:120:110:111#Trans_reg_C:155:2.86e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023656875::NZ_JAMOJW010000001.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1533656-1534381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNB460_07410RefSeq proteinWP_207712246.1
Context group ID
GCF_023656875::NZ_JAMOJW010000001.1::G00021Context members
NB460_RS07415
Partner locus tags
NB460_RS07415
Partner old locus tags
NB460_07410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207712246.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNB460_RS07415Primary locus identifier stored in the genes table.
Old locus tagNB460_07410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJW010000001.1Sequence record reported by the local genomic context database.
Genomic interval1 533 656-1 534 381 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 533 656-1 534 381 ntGCF_023656875::NZ_JAMOJW010000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656875::NZ_JAMOJW010000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 533 656-1 534 381 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 533 656 nt1 534 381 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NB460_RS07415GCF_023656875#NB460_RS07415
RROmpRCurrent focus
1 533 656-1 534 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_023656875#NB460_RS07415The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0873381
Simplified PFAM architecture for RROC_0873381
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0873381
- Positioned domains: Response_reg 12-120 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_023656875#NB460_RS07415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656875
AssemblyASM2365687v1 · Scaffoldhaploid
Genome composition4 174 231 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 46 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key