1 HAMP#1
170-237 aa · 68 aa · 14.7% of protein
Raw token
HAMP:170:0.00000000000035:237:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NB460_RS02760
Histidine kinase, Classic
Clostridioides difficile · GCF_023656875
ClassHKTypeClassicLength464 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023656875#NB460_RS02760Stable P2CS identifier used across views.
GenomeGCF_023656875Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length464 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage213 / 464 aa (45.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa464 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-308 aa · 60 aa · 12.9% of protein
Raw token
HisKA:249:0.000000000624:308:61:643 HATPase_c#3
355-439 aa · 85 aa · 18.3% of protein
Raw token
HATPase_c:355:0.0000000000000173:439:88:109- Raw architecture: HAMP:170:0.00000000000035:237:68:69#HisKA:249:0.000000000624:308:61:64#HATPase_c:355:0.0000000000000173:439:88:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023656875::NZ_JAMOJW010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span526159-528193Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNB460_02755RefSeq proteinWP_102815407.1
Context group ID
GCF_023656875::NZ_JAMOJW010000001.1::G00006Context members
NB460_RS02755NB460_RS02760
Partner locus tags
NB460_RS02755NB460_RS02760
Partner old locus tags
NB460_02750NB460_02755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_102815407.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNB460_RS02760Primary locus identifier stored in the genes table.
Old locus tagNB460_02755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJW010000001.1Sequence record reported by the local genomic context database.
Genomic interval526 799-528 193 nt1 395 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span526 159-528 193 ntGCF_023656875::NZ_JAMOJW010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656875::NZ_JAMOJW010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJW010000001.1All displayed genes belong to this local TCS context.
Neighborhood span526 159-528 193 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
526 159 nt528 193 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NB460_RS02755GCF_023656875#NB460_RS02755
RROmpR
526 159-526 806 nt · Forward (+)
NB460_RS02760GCF_023656875#NB460_RS02760
HKClassicCurrent focus
526 799-528 193 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891605#AMR89_RS16340Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1786178
Simplified PFAM architecture for HKOC_1786178
PFAM domain coverage: 195 / 464 aa (42.0%)
1 aa464 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-236] | HisKA[250-308] | HATPase_c[355-440]
- Domain count: 3
- Matched identifier: HKOC_1786178
- Positioned domains: HAMP 187-236 ; HisKA 250-308 ; HATPase_c 355-440
Cluster members and taxonomy
Representative gene: GCF_002891605#AMR89_RS16340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656875
AssemblyASM2365687v1 · Scaffoldhaploid
Genome composition4 174 231 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 99 · HK 46 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key