1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:3e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBN67_RS18315
Response regulator OmpR family
Clostridioides difficile · GCF_023656865
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023656865#NBN67_RS18315Stable P2CS identifier used across views.
GenomeGCF_023656865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-221 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:144:9.64e-30:221:78:77- Raw architecture: Response_reg:4:3e-34:113:111:111#Trans_reg_C:144:9.64e-30:221:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023656865::NZ_JAMOJX010000001.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3972676-3974338Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNBN67_18265RefSeq proteinWP_168347189.1
Context group ID
GCF_023656865::NZ_JAMOJX010000001.1::G00056Context members
NBN67_RS18310NBN67_RS18315
Partner locus tags
NBN67_RS18310NBN67_RS18315
Partner old locus tags
NBN67_18260NBN67_18265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_168347189.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBN67_RS18315Primary locus identifier stored in the genes table.
Old locus tagNBN67_18265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJX010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 973 652-3 974 338 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 972 676-3 974 338 ntGCF_023656865::NZ_JAMOJX010000001.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656865::NZ_JAMOJX010000001.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 972 676-3 974 338 nt1 663 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 972 676 nt3 974 338 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NBN67_RS18310GCF_023656865#NBN67_RS18310
HKClassic
3 972 676-3 973 665 nt · Reverse (-)
NBN67_RS18315GCF_023656865#NBN67_RS18315
RROmpRCurrent focus
3 973 652-3 974 338 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS13260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1320896
Simplified PFAM architecture for RROC_1320896
PFAM domain coverage: 188 / 228 aa (82.5%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-221]
- Domain count: 2
- Matched identifier: RROC_1320896
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 144-221
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS13260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656865
AssemblyASM2365686v1 · Scaffoldhaploid
Genome composition4 457 763 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 46 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key