1 HisKA#1
457-524 aa · 68 aa · 9.9% of protein
Raw token
HisKA:457:0.0000000000000198:524:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBN67_RS11580
Histidine kinase, Classic
Clostridioides difficile · GCF_023656865
ClassHKTypeClassicLength686 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023656865#NBN67_RS11580Stable P2CS identifier used across views.
GenomeGCF_023656865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length686 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 686 aa (23.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa686 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
570-663 aa · 94 aa · 13.7% of protein
Raw token
HATPase_c:570:0.00000000000196:663:98:109- Raw architecture: HisKA:457:0.0000000000000198:524:68:64#HATPase_c:570:0.00000000000196:663:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023656865::NZ_JAMOJX010000001.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2453871-2456819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNBN67_11540RefSeq proteinWP_168347142.1
Context group ID
GCF_023656865::NZ_JAMOJX010000001.1::G00037Context members
NBN67_RS11580NBN67_RS11585
Partner locus tags
NBN67_RS11580NBN67_RS11585
Partner old locus tags
NBN67_11540NBN67_11545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_168347142.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBN67_RS11580Primary locus identifier stored in the genes table.
Old locus tagNBN67_11540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJX010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 453 871-2 455 931 nt2 061 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 453 871-2 456 819 ntGCF_023656865::NZ_JAMOJX010000001.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656865::NZ_JAMOJX010000001.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 453 871-2 456 819 nt2 949 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 453 871 nt2 456 819 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NBN67_RS11580GCF_023656865#NBN67_RS11580
HKClassicCurrent focus
2 453 871-2 455 931 nt · Reverse (-)
NBN67_RS11585GCF_023656865#NBN67_RS11585
RROmpR
2 456 127-2 456 819 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891605#AMR89_RS04810Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0801406
Simplified PFAM architecture for HKOC_0801406
PFAM domain coverage: 160 / 686 aa (23.3%)
1 aa686 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[457-524] | HATPase_c[571-662]
- Domain count: 2
- Matched identifier: HKOC_0801406
- Positioned domains: HisKA 457-524 ; HATPase_c 571-662
Cluster members and taxonomy
Representative gene: GCF_002891605#AMR89_RS04810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656865
AssemblyASM2365686v1 · Scaffoldhaploid
Genome composition4 457 763 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 46 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key