1 Response_reg#1
8-108 aa · 101 aa · 42.4% of protein
Raw token
Response_reg:8:7.36e-20:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBH13_RS08515
Response regulator LytTR family
Bifidobacterium sp. M3-R-103 · GCF_023656765
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023656765#NBH13_RS08515Stable P2CS identifier used across views.
GenomeGCF_023656765Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 238 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:9.37e-20:230:97:98- Raw architecture: Response_reg:8:7.36e-20:108:106:111#LytTR:139:9.37e-20:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023656765::NZ_JAMOKR010000007.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21581-22297Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNBH13_08515RefSeq proteinWP_180753713.1
Context group ID
GCF_023656765::NZ_JAMOKR010000007.1::G00011Context members
NBH13_RS08515
Partner locus tags
NBH13_RS08515
Partner old locus tags
NBH13_08515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_180753713.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1CAW7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1CAW7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBH13_RS08515Primary locus identifier stored in the genes table.
Old locus tagNBH13_08515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOKR010000007.1Sequence record reported by the local genomic context database.
Genomic interval21 581-22 297 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 581-22 297 ntGCF_023656765::NZ_JAMOKR010000007.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656765::NZ_JAMOKR010000007.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOKR010000007.1All displayed genes belong to this local TCS context.
Neighborhood span21 581-22 297 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 581 nt22 297 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NBH13_RS08515GCF_023656765#NBH13_RS08515
RRLytTRCurrent focus
21 581-22 297 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742425#CE168_RS05520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0938903
Simplified PFAM architecture for RROC_0938903
PFAM domain coverage: 192 / 238 aa (80.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-109] | LytTR[142-230]
- Domain count: 2
- Matched identifier: RROC_0938903
- Positioned domains: Response_reg 7-109 ; Response_reg 7-109 ; LytTR 142-230 ; LytTR 142-230
Cluster members and taxonomy
Representative gene: GCF_002742425#CE168_RS05520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 949 652 · GCF_023656765
AssemblyASM2365676v1 · Contighaploid
Genome composition2 080 619 bp · 56,5% GCBifidobacterium sp. M3-R-103
Signal transduction countsGenes 18 · HK 8 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key