1 HisKA#1
184-249 aa · 66 aa · 14.7% of protein
Raw token
HisKA:184:0.00000000000382:249:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NBH13_RS03300
Histidine kinase, Classic
Bifidobacterium sp. M3-R-103 · GCF_023656765
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023656765#NBH13_RS03300Stable P2CS identifier used across views.
GenomeGCF_023656765Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 448 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
312-424 aa · 113 aa · 25.2% of protein
Raw token
HATPase_c:312:8.27e-29:424:113:109- Raw architecture: HisKA:184:0.00000000000382:249:66:64#HATPase_c:312:8.27e-29:424:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023656765::NZ_JAMOKR010000002.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span128274-130407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNBH13_03300RefSeq proteinWP_099570989.1
Context group ID
GCF_023656765::NZ_JAMOKR010000002.1::G00007Context members
NBH13_RS03300NBH13_RS03305
Partner locus tags
NBH13_RS03300NBH13_RS03305
Partner old locus tags
NBH13_03300NBH13_03305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_099570989.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1C6V9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1C6V9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNBH13_RS03300Primary locus identifier stored in the genes table.
Old locus tagNBH13_03300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOKR010000002.1Sequence record reported by the local genomic context database.
Genomic interval128 274-129 620 nt1 347 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span128 274-130 407 ntGCF_023656765::NZ_JAMOKR010000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656765::NZ_JAMOKR010000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOKR010000002.1All displayed genes belong to this local TCS context.
Neighborhood span128 274-130 407 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 274 nt130 407 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NBH13_RS03300GCF_023656765#NBH13_RS03300
HKClassicCurrent focus
128 274-129 620 nt · Forward (+)
NBH13_RS03305GCF_023656765#NBH13_RS03305
RROmpR
129 703-130 407 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002742425#CE168_RS02660Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1990104
Simplified PFAM architecture for HKOC_1990104
PFAM domain coverage: 177 / 448 aa (39.5%)
1 aa448 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[184-249] | HATPase_c[313-423]
- Domain count: 2
- Matched identifier: HKOC_1990104
- Positioned domains: HisKA 184-249 ; HATPase_c 313-423
Cluster members and taxonomy
Representative gene: GCF_002742425#CE168_RS02660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 949 652 · GCF_023656765
AssemblyASM2365676v1 · Contighaploid
Genome composition2 080 619 bp · 56,5% GCBifidobacterium sp. M3-R-103
Signal transduction countsGenes 18 · HK 8 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key