Gene detail

HUE65_RS01240

Histidine kinase, Classic

Bifidobacterium longum subsp. infantis · GCF_023208155

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_023208155#HUE65_RS01240Stable P2CS identifier used across views.

GenomeGCF_023208155Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_2503784Run 6 · 7 sequences · id 100% · cov 80%

External referencesWP_230581197.1 · MIST4 HUE65_RS01240RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_c

Protein length393 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage144 / 393 aa (36.6%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa393 aa

Domain-by-domain annotation2 items

1 HisKA_3#1

171-235 aa · 65 aa · 16.5% of protein

Raw tokenHisKA_3:171:0.0000000000139:235:65:68

2 HATPase_c#2

301-379 aa · 79 aa · 20.1% of protein

Raw tokenHATPase_c:301:0.0000796:379:89:109

Raw architecture: HisKA_3:171:0.0000000000139:235:65:68#HATPase_c:301:0.0000796:379:89:109
Domain description: 1 HisKA_3,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_023208155::NZ_CP054596.1::G00003

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span285992-287897Genomic interval covered by the local TCS group.

Identifiers

Old locus tagHUE65_01260RefSeq proteinWP_230581197.1

Context group IDGCF_023208155::NZ_CP054596.1::G00003

Context members

HUE65_RS01240HUE65_RS01245

Partner locus tags

HUE65_RS01240HUE65_RS01245

Partner old locus tags

HUE65_01260HUE65_01265

Partner protein IDs

WP_230581197.1 WP_032743799.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_230581197.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagHUE65_RS01240Primary locus identifier stored in the genes table.

Old locus tagHUE65_01260Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CP054596.1Sequence record reported by the local genomic context database.

Genomic interval285 992-287 173 nt1 182 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span285 992-287 897 ntGCF_023208155::NZ_CP054596.1::G00003

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_023208155::NZ_CP054596.1::G00003

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CP054596.1All displayed genes belong to this local TCS context.

Neighborhood span285 992-287 897 nt1 906 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

285 992 nt287 897 nt

+-HUE65_RS01240 HUE65_RS01245

Neighborhood gene cards

2 genes in the current local neighborhood.

HUE65_RS01240GCF_023208155#HUE65_RS01240

HKClassicCurrent focus

285 992-287 173 nt · Forward (+)

Old locus HUE65_01260RefSeq WP_230581197.1

Open current gene

HUE65_RS01245GCF_023208155#HUE65_RS01245

RRNarL

287 190-287 897 nt · Forward (+)

Old locus HUE65_01265RefSeq WP_032743799.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2503784HK

Run 67 sequencesid 100%cov 80%

PFAM HisKA_3

Representative GCF_000730125#EK3BL_RS08240

Selected clusterHKOC_2503784Run 6 · HK · 7 sequences

Representative sequenceGCF_000730125#EK3BL_RS08240Use this link to inspect the representative gene detail.

PFAM architectureHisKA_31 domain in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_2503784

Simplified PFAM architecture for HKOC_2503784

PFAM domain coverage: 68 / 393 aa (17.3%)

1 aa393 aa

HisKA_3

Simplified architecture: HisKA_3
Raw architecture: HisKA_3[171-238]
Domain count: 1
Matched identifier: HKOC_2503784
Positioned domains: HisKA_3 171-238

Cluster members and taxonomy

Representative gene: GCF_000730125#EK3BL_RS08240

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 682 · GCF_023208155

AssemblyASM2320815v1 · Complete Genomehaploid

Genome composition2 610 477 bp · 59,0% GCBifidobacterium longum subsp. infantis

Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key