1 HisKA#1
1-66 aa · 66 aa · 29.6% of protein
Raw token
HisKA:1:0.00000000169:66:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HUE69_RS00005
Histidine kinase, Classic
Bifidobacterium longum subsp. infantis · GCF_023208035
ClassHKTypeClassicLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023208035#HUE69_RS00005Stable P2CS identifier used across views.
GenomeGCF_023208035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 223 aa (76.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
112-215 aa · 104 aa · 46.6% of protein
Raw token
HATPase_c:112:3.78e-30:215:104:109- Raw architecture: HisKA:1:0.00000000169:66:66:64#HATPase_c:112:3.78e-30:215:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023208035::NZ_CP054519.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span136-807Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHUE69_00005RefSeq proteinWP_217906304.1
Context group ID
GCF_023208035::NZ_CP054519.1::G00001Context members
HUE69_RS00005
Partner locus tags
HUE69_RS00005
Partner old locus tags
HUE69_00005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_217906304.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHUE69_RS00005Primary locus identifier stored in the genes table.
Old locus tagHUE69_00005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP054519.1Sequence record reported by the local genomic context database.
Genomic interval136-807 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span136-807 ntGCF_023208035::NZ_CP054519.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023208035::NZ_CP054519.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP054519.1All displayed genes belong to this local TCS context.
Neighborhood span136-807 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 nt807 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HUE69_RS00005GCF_023208035#HUE69_RS00005
HKClassicCurrent focus
136-807 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004919065#EE567_RS02365Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2927821
Simplified PFAM architecture for HKOC_2927821
PFAM domain coverage: 170 / 223 aa (76.2%)
1 aa223 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[3-66] | HATPase_c[112-217]
- Domain count: 2
- Matched identifier: HKOC_2927821
- Positioned domains: HisKA 3-66 ; HATPase_c 112-217
Cluster members and taxonomy
Representative gene: GCF_004919065#EE567_RS02365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_023208035
AssemblyASM2320803v1 · Complete Genomehaploid
Genome composition2 609 031 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 11 · RR 22CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key