1 Response_reg#1
11-124 aa · 114 aa · 51.6% of protein
Raw token
Response_reg:11:0.00000000000000386:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HUE61_RS01220
Response regulator NarL family
Bifidobacterium longum subsp. infantis · GCF_023205835
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_023205835#HUE61_RS01220Stable P2CS identifier used across views.
GenomeGCF_023205835Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 221 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-214 aa · 57 aa · 25.8% of protein
Raw token
HTH_LUXR:158:0.0000000000000284:214:57:58- Raw architecture: Response_reg:11:0.00000000000000386:124:114:111#HTH_LUXR:158:0.0000000000000284:214:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_023205835::NZ_CP054526.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span260666-261331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHUE61_01220RefSeq proteinWP_032744358.1
Context group ID
GCF_023205835::NZ_CP054526.1::G00004Context members
HUE61_RS01220
Partner locus tags
HUE61_RS01220
Partner old locus tags
HUE61_01220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032744358.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D5CBZ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D5CBZ7_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHUE61_RS01220Primary locus identifier stored in the genes table.
Old locus tagHUE61_01220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP054526.1Sequence record reported by the local genomic context database.
Genomic interval260 666-261 331 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span260 666-261 331 ntGCF_023205835::NZ_CP054526.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023205835::NZ_CP054526.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP054526.1All displayed genes belong to this local TCS context.
Neighborhood span260 666-261 331 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
260 666 nt261 331 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HUE61_RS01220GCF_023205835#HUE61_RS01220
RRNarLCurrent focus
260 666-261 331 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730125#EK3BL_RS05700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1680653
Simplified PFAM architecture for RROC_1680653
PFAM domain coverage: 166 / 221 aa (75.1%)
1 aa221 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[161-213]
- Domain count: 2
- Matched identifier: RROC_1680653
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 161-213 ; GerE 161-213
Cluster members and taxonomy
Representative gene: GCF_000730125#EK3BL_RS05700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 682 · GCF_023205835
AssemblyASM2320583v1 · Complete Genomehaploid
Genome composition2 604 549 bp · 59,5% GCBifidobacterium longum subsp. infantis
Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key