Gene detail

HUE62_RS00625

Histidine kinase, Classic

Bifidobacterium longum subsp. infantis · GCF_023205815

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength223 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_023205815#HUE62_RS00625Stable P2CS identifier used across views.

GenomeGCF_023205815Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_2927821Run 6 · 15 sequences · id 100% · cov 80%

External referencesWP_217906304.1 · MIST4 HUE62_RS00625RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length223 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage170 / 223 aa (76.2%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa223 aa

Domain-by-domain annotation2 items

1 HisKA#1

1-66 aa · 66 aa · 29.6% of protein

Raw tokenHisKA:1:0.00000000169:66:66:64

2 HATPase_c#2

112-215 aa · 104 aa · 46.6% of protein

Raw tokenHATPase_c:112:3.78e-30:215:104:109

Raw architecture: HisKA:1:0.00000000169:66:66:64#HATPase_c:112:3.78e-30:215:104:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_023205815::NZ_CP054525.1::G00005

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span130133-130804Genomic interval covered by the local TCS group.

Identifiers

Old locus tagHUE62_00625RefSeq proteinWP_217906304.1

Context group IDGCF_023205815::NZ_CP054525.1::G00005

Context members

HUE62_RS00625

Partner locus tags

HUE62_RS00625

Partner old locus tags

HUE62_00625

Partner protein IDs

WP_217906304.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_217906304.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagHUE62_RS00625Primary locus identifier stored in the genes table.

Old locus tagHUE62_00625Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CP054525.1Sequence record reported by the local genomic context database.

Genomic interval130 133-130 804 nt672 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span130 133-130 804 ntGCF_023205815::NZ_CP054525.1::G00005

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_023205815::NZ_CP054525.1::G00005

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CP054525.1All displayed genes belong to this local TCS context.

Neighborhood span130 133-130 804 nt672 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

130 133 nt130 804 nt

+-HUE62_RS00625

Neighborhood gene cards

1 gene in the current local neighborhood.

HUE62_RS00625GCF_023205815#HUE62_RS00625

HKClassicCurrent focus

130 133-130 804 nt · Reverse (-)

Old locus HUE62_00625RefSeq WP_217906304.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_2927821HK

Run 615 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Representative GCF_004919065#EE567_RS02365

Selected clusterHKOC_2927821Run 6 · HK · 15 sequences

Representative sequenceGCF_004919065#EE567_RS02365Use this link to inspect the representative gene detail.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_2927821

Simplified PFAM architecture for HKOC_2927821

PFAM domain coverage: 170 / 223 aa (76.2%)

1 aa223 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[3-66] | HATPase_c[112-217]
Domain count: 2
Matched identifier: HKOC_2927821
Positioned domains: HisKA 3-66 ; HATPase_c 112-217

Cluster members and taxonomy

Representative gene: GCF_004919065#EE567_RS02365

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 682 · GCF_023205815

AssemblyASM2320581v1 · Complete Genomehaploid

Genome composition2 612 005 bp · 59,5% GCBifidobacterium longum subsp. infantis

Signal transduction countsGenes 39 · HK 12 · RR 22CheA 0 · PP 5

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

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