1 SBP_bac_3#1
52-241 aa · 190 aa · 20.2% of protein
Raw token
SBP_bac_3:52:1.83e-32:241:200:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QVD24_RS06830
Histidine kinase, Hybrid
Anaerostipes sp. · GCF_022719335
ClassHKTypeHybridLength940 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022719335#QVD24_RS06830Stable P2CS identifier used across views.
GenomeGCF_022719335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length940 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage692 / 940 aa (73.6%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa940 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
287-485 aa · 199 aa · 21.2% of protein
Raw token
SBP_bac_3:287:0.000000000206:485:216:2243 HisKA#3
566-631 aa · 66 aa · 7.0% of protein
Raw token
HisKA:566:2.42e-19:631:66:644 HATPase_c#4
678-796 aa · 119 aa · 12.7% of protein
Raw token
HATPase_c:678:2.05e-28:796:120:1095 Response_reg#5
819-936 aa · 118 aa · 12.6% of protein
Raw token
Response_reg:819:3.22e-29:936:118:111- Raw architecture: SBP_bac_3:52:1.83e-32:241:200:224#SBP_bac_3:287:0.000000000206:485:216:224#HisKA:566:2.42e-19:631:66:64#HATPase_c:678:2.05e-28:796:120:109#Response_reg:819:3.22e-29:936:118:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022719335::NZ_JAIHXI010000108.1::G00002
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span181-5925Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022719335::NZ_JAIHXI010000108.1::G00002Context members
QVD24_RS06830QVD24_RS06835
Partner locus tags
QVD24_RS06830QVD24_RS06835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_287712078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQVD24_RS06830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAIHXI010000108.1Sequence record reported by the local genomic context database.
Genomic interval181-3 003 nt2 823 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span181-5 925 ntGCF_022719335::NZ_JAIHXI010000108.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022719335::NZ_JAIHXI010000108.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIHXI010000108.1All displayed genes belong to this local TCS context.
Neighborhood span181-5 925 nt5 745 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 nt5 925 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QVD24_RS06830GCF_022719335#QVD24_RS06830
HKHybridCurrent focus
181-3 003 nt · Forward (+)
QVD24_RS06835GCF_022719335#QVD24_RS06835
HKHybrid
3 133-5 925 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022719335#QVD24_RS06830The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0340726
Simplified PFAM architecture for HKOC_0340726
PFAM domain coverage: 494 / 940 aa (52.6%)
1 aa940 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[49-241] | HisKA[566-631] | HATPase_c[679-795] | Response_reg[819-936]
- Domain count: 4
- Matched identifier: HKOC_0340726
- Positioned domains: SBP_bac_3 49-241 ; HisKA 566-631 ; HATPase_c 679-795 ; Response_reg 819-936
Cluster members and taxonomy
Representative gene: GCF_022719335#QVD24_RS06830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 872 530 · GCF_022719335
AssemblyASM2271933v1 · Contighaploid
Genome composition2 774 898 bp · 38,0% GCAnaerostipes sp.
Signal transduction countsGenes 51 · HK 27 · RR 22CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key