1 KdpD#1
5-214 aa · 210 aa · 22.2% of protein
Raw token
KdpD:5:1.61e-121:214:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LMY38_RS00120
Histidine kinase, Classic
Bifidobacterium longum · GCF_022701235
ClassHKTypeClassicLength947 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022701235#LMY38_RS00120Stable P2CS identifier used across views.
GenomeGCF_022701235Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length947 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage387 / 947 aa (40.9%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
644-710 aa · 67 aa · 7.1% of protein
Raw token
HisKA:644:0.00000000604:710:67:643 HATPase_c#3
753-862 aa · 110 aa · 11.6% of protein
Raw token
HATPase_c:753:9.45e-24:862:110:109- Raw architecture: KdpD:5:1.61e-121:214:210:210#HisKA:644:0.00000000604:710:67:64#HATPase_c:753:9.45e-24:862:110:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022701235::NZ_CP090790.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17313-20865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLMY38_00120RefSeq proteinWP_032683493.1
Context group ID
GCF_022701235::NZ_CP090790.1::G00001Context members
LMY38_RS00115LMY38_RS00120
Partner locus tags
LMY38_RS00115LMY38_RS00120
Partner old locus tags
LMY38_00115LMY38_00120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032683493.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BL17Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BL17_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLMY38_RS00120Primary locus identifier stored in the genes table.
Old locus tagLMY38_00120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP090790.1Sequence record reported by the local genomic context database.
Genomic interval18 022-20 865 nt2 844 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 313-20 865 ntGCF_022701235::NZ_CP090790.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022701235::NZ_CP090790.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP090790.1All displayed genes belong to this local TCS context.
Neighborhood span17 313-20 865 nt3 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 313 nt20 865 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LMY38_RS00115GCF_022701235#LMY38_RS00115
RROmpR
17 313-18 017 nt · Reverse (-)
LMY38_RS00120GCF_022701235#LMY38_RS00120
HKClassicCurrent focus
18 022-20 865 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS05145Use this link to inspect the representative gene detail.
PFAM architectureKdpD + Usp + DUF4118 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0332781
Simplified PFAM architecture for HKOC_0332781
PFAM domain coverage: 612 / 947 aa (64.6%)
1 aa947 aa
KdpDUspDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + Usp + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[5-214] | Usp[235-358] | DUF4118[388-491] | HisKA[644-709] | HATPase_c[754-861]
- Domain count: 5
- Matched identifier: HKOC_0332781
- Positioned domains: KdpD 5-214 ; Usp 235-358 ; DUF4118 388-491 ; HisKA 644-709 ; HATPase_c 754-861
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS05145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022701235
AssemblyASM2270123v1 · Complete Genomehaploid
Genome composition2 417 164 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key