1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.00000000000000138:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G8B11_RS02445
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_022644225
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022644225#G8B11_RS02445Stable P2CS identifier used across views.
GenomeGCF_022644225Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:1.26e-17:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:5.37e-21:627:148:109- Raw architecture: HAMP:267:0.00000000000000138:335:69:69#HisKA:347:1.26e-17:416:70:64#HATPase_c:480:5.37e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022644225::NZ_CP049772.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span546221-548973Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG8B11_02450RefSeq proteinWP_242075997.1
Context group ID
GCF_022644225::NZ_CP049772.1::G00002Context members
G8B11_RS02440G8B11_RS02445
Partner locus tags
G8B11_RS02440G8B11_RS02445
Partner old locus tags
G8B11_02445G8B11_02450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242075997.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q8QVI0Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q8QVI0_BIFLLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG8B11_RS02445Primary locus identifier stored in the genes table.
Old locus tagG8B11_02450Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP049772.1Sequence record reported by the local genomic context database.
Genomic interval546 982-548 973 nt1 992 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span546 221-548 973 ntGCF_022644225::NZ_CP049772.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022644225::NZ_CP049772.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP049772.1All displayed genes belong to this local TCS context.
Neighborhood span546 221-548 973 nt2 753 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
546 221 nt548 973 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G8B11_RS02440GCF_022644225#G8B11_RS02440
RROmpR
546 221-546 952 nt · Forward (+)
G8B11_RS02445GCF_022644225#G8B11_RS02445
HKClassicCurrent focus
546 982-548 973 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022643625#G8B14_RS01020Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0865812
Simplified PFAM architecture for HKOC_0865812
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0865812
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_022643625#G8B14_RS01020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_022644225
AssemblyASM2264422v1 · Chromosomehaploid
Genome composition2 441 145 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key