1 Response_reg#1
5-114 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:5:4.33e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MLD62_RS09830
Response regulator OmpR family
Bacillus mycoides · GCF_022532085
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022532085#MLD62_RS09830Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 33.3% of protein
Raw token
Trans_reg_C:147:8.59e-27:221:76:77- Raw architecture: Response_reg:5:4.33e-38:114:111:111#Trans_reg_C:147:8.59e-27:221:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022532085::NZ_CP092833.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1926713-1928460Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022532085::NZ_CP092833.1::G00028Context members
MLD62_RS09830MLD62_RS09835
Partner locus tags
MLD62_RS09830MLD62_RS09835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085310518.1Primary protein accession used for annex mappings.
UniProt accessionA0A1W6A760Primary UniProt accession resolved in the annex database.
UniProt IDA0A1W6A760_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMLD62_RS09830Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP092833.1Sequence record reported by the local genomic context database.
Genomic interval1 926 713-1 927 390 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 926 713-1 928 460 ntGCF_022532085::NZ_CP092833.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022532085::NZ_CP092833.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP092833.1All displayed genes belong to this local TCS context.
Neighborhood span1 926 713-1 928 460 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 926 713 nt1 928 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MLD62_RS09830GCF_022532085#MLD62_RS09830
RROmpRCurrent focus
1 926 713-1 927 390 nt · Forward (+)
MLD62_RS09835GCF_022532085#MLD62_RS09835
HKClassic
1 927 387-1 928 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002104575#B7492_RS10410Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1474941
Simplified PFAM architecture for RROC_1474941
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1474941
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_002104575#B7492_RS10410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_022532085
AssemblyASM2253208v1 · Complete Genomehaploid
Genome composition6 002 587 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key