1 Response_reg#1
4-113 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:4:5.08e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF922_RS07940
Response regulator OmpR family
Bifidobacterium longum · GCF_022496455
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496455#LF922_RS07940Stable P2CS identifier used across views.
GenomeGCF_022496455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-235 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:159:1.27e-32:235:77:77- Raw architecture: Response_reg:4:5.08e-36:113:111:111#Trans_reg_C:159:1.27e-32:235:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496455::NZ_JAIZGZ010000008.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span115148-117564Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF922_07940RefSeq proteinWP_029679631.1
Context group ID
GCF_022496455::NZ_JAIZGZ010000008.1::G00012Context members
LF922_RS07935LF922_RS07940
Partner locus tags
LF922_RS07935LF922_RS07940
Partner old locus tags
LF922_07935LF922_07940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_029679631.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF922_RS07940Primary locus identifier stored in the genes table.
Old locus tagLF922_07940Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGZ010000008.1Sequence record reported by the local genomic context database.
Genomic interval116 842-117 564 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span115 148-117 564 ntGCF_022496455::NZ_JAIZGZ010000008.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496455::NZ_JAIZGZ010000008.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGZ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span115 148-117 564 nt2 417 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
115 148 nt117 564 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF922_RS07935GCF_022496455#LF922_RS07935
HKClassic
115 148-116 845 nt · Reverse (-)
LF922_RS07940GCF_022496455#LF922_RS07940
RROmpRCurrent focus
116 842-117 564 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000421385#G629_RS0103665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0883248
Simplified PFAM architecture for RROC_0883248
PFAM domain coverage: 187 / 240 aa (77.9%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[159-235]
- Domain count: 2
- Matched identifier: RROC_0883248
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 159-235 ; Trans_reg_C 159-235
Cluster members and taxonomy
Representative gene: GCF_000421385#G629_RS0103665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022496455
AssemblyASM2249645v1 · Contighaploid
Genome composition2 526 524 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key