1 Response_reg#1
4-114 aa · 111 aa · 38.3% of protein
Raw token
Response_reg:4:8.68e-30:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF922_RS06015
Response regulator OmpR family
Bifidobacterium longum · GCF_022496455
ClassRRTypeOmpRLength290 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496455#LF922_RS06015Stable P2CS identifier used across views.
GenomeGCF_022496455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length290 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 290 aa (61.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa290 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-219 aa · 67 aa · 23.1% of protein
Raw token
Trans_reg_C:153:0.000000000000544:219:71:77- Raw architecture: Response_reg:4:8.68e-30:114:111:111#Trans_reg_C:153:0.000000000000544:219:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496455::NZ_JAIZGZ010000006.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span150510-152676Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF922_06010RefSeq proteinWP_240818192.1
Context group ID
GCF_022496455::NZ_JAIZGZ010000006.1::G00010Context members
LF922_RS06015LF922_RS06020
Partner locus tags
LF922_RS06015LF922_RS06020
Partner old locus tags
LF922_06010LF922_06015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240818192.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF922_RS06015Primary locus identifier stored in the genes table.
Old locus tagLF922_06010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGZ010000006.1Sequence record reported by the local genomic context database.
Genomic interval150 510-151 382 nt873 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span150 510-152 676 ntGCF_022496455::NZ_JAIZGZ010000006.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496455::NZ_JAIZGZ010000006.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGZ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span150 510-152 676 nt2 167 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
150 510 nt152 676 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF922_RS06015GCF_022496455#LF922_RS06015
RROmpRCurrent focus
150 510-151 382 nt · Forward (+)
LF922_RS06020GCF_022496455#LF922_RS06020
HKClassic
151 270-152 676 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022496455#LF922_RS06015The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0587089
Simplified PFAM architecture for RROC_0587089
PFAM domain coverage: 177 / 290 aa (61.0%)
1 aa290 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[153-218]
- Domain count: 2
- Matched identifier: RROC_0587089
- Positioned domains: Response_reg 4-114 ; Trans_reg_C 153-218
Cluster members and taxonomy
Representative gene: GCF_022496455#LF922_RS06015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022496455
AssemblyASM2249645v1 · Contighaploid
Genome composition2 526 524 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key