1 Response_reg#1
3-106 aa · 104 aa · 47.9% of protein
Raw token
Response_reg:3:1.29e-19:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF922_RS04755
Response regulator NarL family
Bifidobacterium longum · GCF_022496455
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496455#LF922_RS04755Stable P2CS identifier used across views.
GenomeGCF_022496455Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 217 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-211 aa · 54 aa · 24.9% of protein
Raw token
HTH_LUXR:158:1.42e-20:211:54:58- Raw architecture: Response_reg:3:1.29e-19:106:104:111#HTH_LUXR:158:1.42e-20:211:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496455::NZ_JAIZGZ010000004.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span570522-572518Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF922_04755RefSeq proteinWP_240818062.1
Context group ID
GCF_022496455::NZ_JAIZGZ010000004.1::G00008Context members
LF922_RS04755LF922_RS04760
Partner locus tags
LF922_RS04755LF922_RS04760
Partner old locus tags
LF922_04755LF922_04760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_240818062.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF922_RS04755Primary locus identifier stored in the genes table.
Old locus tagLF922_04755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGZ010000004.1Sequence record reported by the local genomic context database.
Genomic interval570 522-571 175 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span570 522-572 518 ntGCF_022496455::NZ_JAIZGZ010000004.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496455::NZ_JAIZGZ010000004.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGZ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span570 522-572 518 nt1 997 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
570 522 nt572 518 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF922_RS04755GCF_022496455#LF922_RS04755
RRNarLCurrent focus
570 522-571 175 nt · Reverse (-)
LF922_RS04760GCF_022496455#LF922_RS04760
HKClassic
571 175-572 518 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022496455#LF922_RS04755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1862349
Simplified PFAM architecture for RROC_1862349
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1862349
- Positioned domains: Response_reg 3-107 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_022496455#LF922_RS04755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022496455
AssemblyASM2249645v1 · Contighaploid
Genome composition2 526 524 bp · 60,5% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key