1 Response_reg#1
9-136 aa · 128 aa · 44.8% of protein
Raw token
Response_reg:9:7.42e-29:136:128:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF912_RS04245
Response regulator NarL family
Bifidobacterium longum · GCF_022496375
ClassRRTypeNarLLength286 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496375#LF912_RS04245Stable P2CS identifier used across views.
GenomeGCF_022496375Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length286 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 286 aa (65.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
223-280 aa · 58 aa · 20.3% of protein
Raw token
HTH_LUXR:223:8.04e-25:280:58:58- Raw architecture: Response_reg:9:7.42e-29:136:128:111#HTH_LUXR:223:8.04e-25:280:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496375::NZ_JAIZGW010000004.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span165925-169262Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF912_04265RefSeq proteinWP_032744320.1
Context group ID
GCF_022496375::NZ_JAIZGW010000004.1::G00006Context members
LF912_RS04245LF912_RS04250
Partner locus tags
LF912_RS04245LF912_RS04250
Partner old locus tags
LF912_04265LF912_04270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032744320.1Primary protein accession used for annex mappings.
UniProt accessionA0A7D4XWU5Primary UniProt accession resolved in the annex database.
UniProt IDA0A7D4XWU5_BIFLIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF912_RS04245Primary locus identifier stored in the genes table.
Old locus tagLF912_04265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGW010000004.1Sequence record reported by the local genomic context database.
Genomic interval165 925-166 785 nt861 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span165 925-169 262 ntGCF_022496375::NZ_JAIZGW010000004.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496375::NZ_JAIZGW010000004.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGW010000004.1All displayed genes belong to this local TCS context.
Neighborhood span165 925-169 262 nt3 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 925 nt169 262 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF912_RS04245GCF_022496375#LF912_RS04245
RRNarLCurrent focus
165 925-166 785 nt · Reverse (-)
LF912_RS04250GCF_022496375#LF912_RS04250
HKClassic
166 869-169 262 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730125#EK3BL_RS05975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0590540
Simplified PFAM architecture for RROC_0590540
PFAM domain coverage: 183 / 286 aa (64.0%)
1 aa286 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-135] | GerE[225-280]
- Domain count: 2
- Matched identifier: RROC_0590540
- Positioned domains: Response_reg 9-135 ; Response_reg 9-135 ; GerE 225-280 ; GerE 225-280
Cluster members and taxonomy
Representative gene: GCF_000730125#EK3BL_RS05975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_022496375
AssemblyASM2249637v1 · Contighaploid
Genome composition2 413 224 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key