1 Response_reg#1
3-112 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:3:7.06e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LF913_RS00730
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_022496335
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022496335#LF913_RS00730Stable P2CS identifier used across views.
GenomeGCF_022496335Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:151:1.33e-27:225:75:77- Raw architecture: Response_reg:3:7.06e-34:112:111:111#Trans_reg_C:151:1.33e-27:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022496335::NZ_JAIZGT010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span189526-193078Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLF913_00735RefSeq proteinWP_095279271.1
Context group ID
GCF_022496335::NZ_JAIZGT010000001.1::G00002Context members
LF913_RS00725LF913_RS00730
Partner locus tags
LF913_RS00725LF913_RS00730
Partner old locus tags
LF913_00730LF913_00735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_095279271.1Primary protein accession used for annex mappings.
UniProt accessionA0A267WPD4Primary UniProt accession resolved in the annex database.
UniProt IDA0A267WPD4_BIFPSDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLF913_RS00730Primary locus identifier stored in the genes table.
Old locus tagLF913_00735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIZGT010000001.1Sequence record reported by the local genomic context database.
Genomic interval192 374-193 078 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span189 526-193 078 ntGCF_022496335::NZ_JAIZGT010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022496335::NZ_JAIZGT010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIZGT010000001.1All displayed genes belong to this local TCS context.
Neighborhood span189 526-193 078 nt3 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
189 526 nt193 078 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LF913_RS00725GCF_022496335#LF913_RS00725
HKClassic
189 526-192 369 nt · Forward (+)
LF913_RS00730GCF_022496335#LF913_RS00730
RROmpRCurrent focus
192 374-193 078 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002271255#BPS1E_RS01815Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053553
Simplified PFAM architecture for RROC_1053553
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1053553
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_002271255#BPS1E_RS01815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_022496335
AssemblyASM2249633v1 · Contighaploid
Genome composition2 236 392 bp · 57,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key