1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:3.32e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HZT08_RS14200
Response regulator OmpR family
Shigella flexneri · GCF_022494435
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022494435#HZT08_RS14200Stable P2CS identifier used across views.
GenomeGCF_022494435Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 230 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-225 aa · 73 aa · 31.7% of protein
Raw token
Trans_reg_C:153:4.63e-20:225:78:77- Raw architecture: Response_reg:5:3.32e-34:114:111:111#Trans_reg_C:153:4.63e-20:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022494435::NZ_CP058790.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2903696-2904388Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHZT08_14075RefSeq proteinWP_001408947.1
Context group ID
GCF_022494435::NZ_CP058790.1::G00024Context members
HZT08_RS14200
Partner locus tags
HZT08_RS14200
Partner old locus tags
HZT08_14075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001408947.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHZT08_RS14200Primary locus identifier stored in the genes table.
Old locus tagHZT08_14075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP058790.1Sequence record reported by the local genomic context database.
Genomic interval2 903 696-2 904 388 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 903 696-2 904 388 ntGCF_022494435::NZ_CP058790.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022494435::NZ_CP058790.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP058790.1All displayed genes belong to this local TCS context.
Neighborhood span2 903 696-2 904 388 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 903 696 nt2 904 388 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HZT08_RS14200GCF_022494435#HZT08_RS14200
RROmpRCurrent focus
2 903 696-2 904 388 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000354375#ECMP02101710_RS17240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1201596
Simplified PFAM architecture for RROC_1201596
PFAM domain coverage: 182 / 230 aa (79.1%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[153-225]
- Domain count: 2
- Matched identifier: RROC_1201596
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 153-225 ; Trans_reg_C 153-225
Cluster members and taxonomy
Representative gene: GCF_000354375#ECMP02101710_RS17240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 623 · GCF_022494435
AssemblyASM2249443v1 · Complete Genomehaploid
Genome composition4 998 483 bp · 50,5% GCShigella flexneri
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key