1 Response_reg#1
10-121 aa · 112 aa · 33.2% of protein
Raw token
Response_reg:10:7.18e-37:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HZT08_RS12970
Response regulator, unclassified
Shigella flexneri · GCF_022494435
ClassRRTypeunclassifiedLength337 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022494435#HZT08_RS12970Stable P2CS identifier used across views.
GenomeGCF_022494435Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 337 aa (33.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:10:7.18e-37:121:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022494435::NZ_CP058790.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2668184-2669197Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHZT08_12855RefSeq proteinWP_000193437.1
Context group ID
GCF_022494435::NZ_CP058790.1::G00021Context members
HZT08_RS12970
Partner locus tags
HZT08_RS12970
Partner old locus tags
HZT08_12855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000193437.1Primary protein accession used for annex mappings.
UniProt accessionE0IV25Primary UniProt accession resolved in the annex database.
UniProt IDE0IV25_ECOLWDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHZT08_RS12970Primary locus identifier stored in the genes table.
Old locus tagHZT08_12855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP058790.1Sequence record reported by the local genomic context database.
Genomic interval2 668 184-2 669 197 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 668 184-2 669 197 ntGCF_022494435::NZ_CP058790.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022494435::NZ_CP058790.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP058790.1All displayed genes belong to this local TCS context.
Neighborhood span2 668 184-2 669 197 nt1 014 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 668 184 nt2 669 197 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HZT08_RS12970GCF_022494435#HZT08_RS12970
RRunclassifiedCurrent focus
2 668 184-2 669 197 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000010385#ECSE_RS06665Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0505186
Simplified PFAM architecture for RROC_0505186
PFAM domain coverage: 111 / 337 aa (32.9%)
1 aa337 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[10-120]
- Domain count: 1
- Matched identifier: RROC_0505186
- Positioned domains: Response_reg 10-120 ; Response_reg 10-120
Cluster members and taxonomy
Representative gene: GCF_000010385#ECSE_RS06665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 623 · GCF_022494435
AssemblyASM2249443v1 · Complete Genomehaploid
Genome composition4 998 483 bp · 50,5% GCShigella flexneri
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key