1 Response_reg#1
3-113 aa · 111 aa · 50.7% of protein
Raw token
Response_reg:3:1.13e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HZT08_RS03515
Response regulator OmpR family
Shigella flexneri · GCF_022494435
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022494435#HZT08_RS03515Stable P2CS identifier used across views.
GenomeGCF_022494435Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 219 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 32.9% of protein
Raw token
Trans_reg_C:145:4.14e-28:216:77:77- Raw architecture: Response_reg:3:1.13e-28:113:111:111#Trans_reg_C:145:4.14e-28:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022494435::NZ_CP058790.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span713759-715764Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHZT08_03455RefSeq proteinWP_001221502.1
Context group ID
GCF_022494435::NZ_CP058790.1::G00004Context members
HZT08_RS03510HZT08_RS03515
Partner locus tags
HZT08_RS03510HZT08_RS03515
Partner old locus tags
HZT08_03450HZT08_03455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001221502.1Primary protein accession used for annex mappings.
UniProt accessionA0A8E0FN81Primary UniProt accession resolved in the annex database.
UniProt IDA0A8E0FN81_ECOLXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHZT08_RS03515Primary locus identifier stored in the genes table.
Old locus tagHZT08_03455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP058790.1Sequence record reported by the local genomic context database.
Genomic interval715 105-715 764 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span713 759-715 764 ntGCF_022494435::NZ_CP058790.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022494435::NZ_CP058790.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP058790.1All displayed genes belong to this local TCS context.
Neighborhood span713 759-715 764 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
713 759 nt715 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HZT08_RS03510GCF_022494435#HZT08_RS03510
HKClassic
713 759-715 108 nt · Reverse (-)
HZT08_RS03515GCF_022494435#HZT08_RS03515
RROmpRCurrent focus
715 105-715 764 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002474575#B5J19_RS05985Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1166052
Simplified PFAM architecture for RROC_1166052
PFAM domain coverage: 182 / 231 aa (78.8%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1166052
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_002474575#B5J19_RS05985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 623 · GCF_022494435
AssemblyASM2249443v1 · Complete Genomehaploid
Genome composition4 998 483 bp · 50,5% GCShigella flexneri
Signal transduction countsGenes 60 · HK 29 · RR 31CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusShigella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Shigella
Related genes
Preview from the same derived genome key