1 Response_reg#1
5-115 aa · 111 aa · 91.0% of protein
Raw token
Response_reg:5:5.02e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMS27_RS13585
Response regulator, CheY family
Bacillus wiedmannii · GCF_022458675
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022458675#MMS27_RS13585Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 122 aa (91.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:5.02e-36:115:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022458675::NZ_JAKGBQ010000008.1::G00029
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span86945-87313Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022458675::NZ_JAKGBQ010000008.1::G00029Context members
MMS27_RS13585
Partner locus tags
MMS27_RS13585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000398593.1Primary protein accession used for annex mappings.
UniProt accessionA0A6H0TE55Primary UniProt accession resolved in the annex database.
UniProt IDA0A6H0TE55_BACTUDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMS27_RS13585Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAKGBQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval86 945-87 313 nt369 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 945-87 313 ntGCF_022458675::NZ_JAKGBQ010000008.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022458675::NZ_JAKGBQ010000008.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKGBQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span86 945-87 313 nt369 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 945 nt87 313 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
MMS27_RS13585GCF_022458675#MMS27_RS13585
RRCheYCurrent focus
86 945-87 313 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160955#BCERE0006_RS25455Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2402850
Simplified PFAM architecture for RROC_2402850
PFAM domain coverage: 111 / 122 aa (91.0%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2402850
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_000160955#BCERE0006_RS25455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_022458675
AssemblyASM2245867v1 · Contighaploid
Genome composition5 845 085 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key