1 HAMP#1
164-233 aa · 70 aa · 14.3% of protein
Raw token
HAMP:164:0.0000000000000036:233:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
MMS27_RS07325
Histidine kinase, Classic
Bacillus wiedmannii · GCF_022458675
ClassHKTypeClassicLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022458675#MMS27_RS07325Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 491 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-323 aa · 66 aa · 13.4% of protein
Raw token
HisKA:258:0.000000000000568:323:66:643 HATPase_c#3
369-480 aa · 112 aa · 22.8% of protein
Raw token
HATPase_c:369:1.18e-17:480:113:109- Raw architecture: HAMP:164:0.0000000000000036:233:70:69#HisKA:258:0.000000000000568:323:66:64#HATPase_c:369:1.18e-17:480:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022458675::NZ_JAKGBQ010000004.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122567-124700Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022458675::NZ_JAKGBQ010000004.1::G00014Context members
MMS27_RS07320MMS27_RS07325
Partner locus tags
MMS27_RS07320MMS27_RS07325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_064475431.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PU22Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PU22_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagMMS27_RS07325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAKGBQ010000004.1Sequence record reported by the local genomic context database.
Genomic interval123 225-124 700 nt1 476 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 567-124 700 ntGCF_022458675::NZ_JAKGBQ010000004.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022458675::NZ_JAKGBQ010000004.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKGBQ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span122 567-124 700 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 567 nt124 700 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
MMS27_RS07320GCF_022458675#MMS27_RS07320
RROmpR
122 567-123 232 nt · Forward (+)
MMS27_RS07325GCF_022458675#MMS27_RS07325
HKClassicCurrent focus
123 225-124 700 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001645505#A6280_RS13305Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1527937
Simplified PFAM architecture for HKOC_1527937
PFAM domain coverage: 229 / 491 aa (46.6%)
1 aa491 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-480]
- Domain count: 3
- Matched identifier: HKOC_1527937
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-480
Cluster members and taxonomy
Representative gene: GCF_001645505#A6280_RS13305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 890 302 · GCF_022458675
AssemblyASM2245867v1 · Contighaploid
Genome composition5 845 085 bp · 35,0% GCBacillus wiedmannii
Signal transduction countsGenes 122 · HK 65 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key