1 HAMP#1
282-354 aa · 73 aa · 12.8% of protein
Raw token
HAMP:282:0.0000000941:354:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ML129_RS13985
Histidine kinase, Classic
Enterococcus faecalis V583 · GCF_022406515
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022406515#ML129_RS13985Stable P2CS identifier used across views.
GenomeGCF_022406515Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 570 aa (46.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation3 items
2 His_kinase#2
369-447 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:369:8.36e-28:447:80:803 HATPase_c#3
458-568 aa · 111 aa · 19.5% of protein
Raw token
HATPase_c:458:0.0000000000103:568:113:109- Raw architecture: HAMP:282:0.0000000941:354:73:69#His_kinase:369:8.36e-28:447:80:80#HATPase_c:458:0.0000000000103:568:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022406515::NZ_JAJPFM010000160.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3109Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022406515::NZ_JAJPFM010000160.1::G00008Context members
ML129_RS13980ML129_RS13985
Partner locus tags
ML129_RS13980ML129_RS13985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_010706524.1Primary protein accession used for annex mappings.
UniProt accessionQ832K7Primary UniProt accession resolved in the annex database.
UniProt IDQ832K7_ENTFADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagML129_RS13985Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJPFM010000160.1Sequence record reported by the local genomic context database.
Genomic interval1 397-3 109 nt1 713 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-3 109 ntGCF_022406515::NZ_JAJPFM010000160.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022406515::NZ_JAJPFM010000160.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJPFM010000160.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 109 nt3 109 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 109 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ML129_RS13980GCF_022406515#ML129_RS13980
RRunclassified
1-1 385 nt · Reverse (-)
ML129_RS13985GCF_022406515#ML129_RS13985
HKClassicCurrent focus
1 397-3 109 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS10615Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1182839
Simplified PFAM architecture for HKOC_1182839
PFAM domain coverage: 180 / 576 aa (31.3%)
1 aa576 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[375-453] | HATPase_c[474-574]
- Domain count: 2
- Matched identifier: HKOC_1182839
- Positioned domains: His_kinase 375-453 ; HATPase_c 474-574
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS10615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 226 185 · GCF_022406515
AssemblyASM2240651v1 · Contighaploid
Genome composition3 258 787 bp · 37,5% GCEnterococcus faecalis V583
Signal transduction countsGenes 32 · HK 14 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key