1 Response_reg#1
3-111 aa · 109 aa · 51.9% of protein
Raw token
Response_reg:3:1.73e-28:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ML129_RS11815
Response regulator OmpR family
Enterococcus faecalis V583 · GCF_022406515
ClassRRTypeOmpRLength210 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022406515#ML129_RS11815Stable P2CS identifier used across views.
GenomeGCF_022406515Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length210 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 210 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa210 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-210 aa · 69 aa · 32.9% of protein
Raw token
Trans_reg_C:142:3.3e-19:210:74:77- Raw architecture: Response_reg:3:1.73e-28:111:111:111#Trans_reg_C:142:3.3e-19:210:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022406515::NZ_JAJPFM010000117.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1872-2502Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022406515::NZ_JAJPFM010000117.1::G00004Context members
ML129_RS11815
Partner locus tags
ML129_RS11815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158182335.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagML129_RS11815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAJPFM010000117.1Sequence record reported by the local genomic context database.
Genomic interval1 872-2 502 nt631 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 872-2 502 ntGCF_022406515::NZ_JAJPFM010000117.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022406515::NZ_JAJPFM010000117.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJPFM010000117.1All displayed genes belong to this local TCS context.
Neighborhood span1 872-2 502 nt631 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 872 nt2 502 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ML129_RS11815GCF_022406515#ML129_RS11815
RROmpRCurrent focus
1 872-2 502 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019841765#K6Z43_RS12075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1611889
Simplified PFAM architecture for RROC_1611889
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1611889
- Positioned domains: Response_reg 3-110 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_019841765#K6Z43_RS12075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 226 185 · GCF_022406515
AssemblyASM2240651v1 · Contighaploid
Genome composition3 258 787 bp · 37,5% GCEnterococcus faecalis V583
Signal transduction countsGenes 32 · HK 14 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key