1 HisKA#1
126-192 aa · 67 aa · 19.4% of protein
Raw token
HisKA:126:6.24e-18:192:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C1S63_RS11730
Histidine kinase, Classic
Clostridioides difficile · GCF_022342385
ClassHKTypeClassicLength346 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022342385#C1S63_RS11730Stable P2CS identifier used across views.
GenomeGCF_022342385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length346 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 346 aa (49.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa346 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
239-343 aa · 105 aa · 30.3% of protein
Raw token
HATPase_c:239:0.000000000629:343:110:109- Raw architecture: HisKA:126:6.24e-18:192:67:64#HATPase_c:239:0.000000000629:343:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022342385::NZ_POUH01000057.1::G00046
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span51465-52505Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_022342385::NZ_POUH01000057.1::G00046Context members
C1S63_RS11730
Partner locus tags
C1S63_RS11730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236880629.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC1S63_RS11730Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_POUH01000057.1Sequence record reported by the local genomic context database.
Genomic interval51 465-52 505 nt1 041 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 465-52 505 ntGCF_022342385::NZ_POUH01000057.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022342385::NZ_POUH01000057.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_POUH01000057.1All displayed genes belong to this local TCS context.
Neighborhood span51 465-52 505 nt1 041 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 465 nt52 505 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
C1S63_RS11730GCF_022342385#C1S63_RS11730
HKClassicCurrent focus
51 465-52 505 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022342335#C1S61_RS18120Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2817394
Simplified PFAM architecture for HKOC_2817394
PFAM domain coverage: 172 / 346 aa (49.7%)
1 aa346 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[126-192] | HATPase_c[239-343]
- Domain count: 2
- Matched identifier: HKOC_2817394
- Positioned domains: HisKA 126-192 ; HATPase_c 239-343
Cluster members and taxonomy
Representative gene: GCF_022342335#C1S61_RS18120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_022342385
AssemblyASM2234238v1 · Contighaploid
Genome composition4 102 053 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 108 · HK 51 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key